Mercurial > repos > megan-shortridge > degenerateprimerremoval_fastq

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planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
author megan-shortridge
date Tue, 15 Sep 2015 14:14:41 -0400
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716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
1 The total number of sequences that were analyzed was 166.
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
2
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
3 Adapter was found and removed for 165 sequences (99% of total).
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
4
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
5 Sequences that did not contain the adapter were kept.
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
6
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
7 The adapters were removed from the dataset.
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
8
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
9 Adapters were removed from the 5' end.
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
10
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
11 The name of the adapter that was removed was named UniA, and had the sequence ACCTGCCTGCCG.
716cdcccc919 planemo upload for repository https://github.com/mshortr/degenerateprimerremoval_fastq commit 7d51a7e3ccb0164b530bf1664068d86241f2f2f5-dirty
megan-shortridge
parents:
diff changeset
12