Mercurial > repos > melpetera > corr_table
diff CorrTable/README.md @ 1:29ec7e3afdd4 draft
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author | melpetera |
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date | Thu, 01 Aug 2019 11:30:58 -0400 |
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children | 2173ad5e7750 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/CorrTable/README.md Thu Aug 01 11:30:58 2019 -0400 @@ -0,0 +1,45 @@ +Between-table Correlation +======= + +Metadata +----------- + + * **@name**: Between-table Correlation + * **@version**: 1.0.0 + * **@authors**: Original code: Ophelie Barbet (PFEM - INRA) - Maintainer: Melanie Petera (PFEM - INRA - MetaboHUB) + * **@init date**: 2018, May + * **@main usage**: This tool builds a correlation table from two seperate tables, with filtering options and graphical outputs. + + +Context +----------- + +This tool is provided as one of the [Workflow4Metabolomics](http://workflow4metabolomics.org) Galaxy instance statistical tools. +W4M is a French infrastructure providing software tools to process, analyse and annotate metabolomics data. + +User interface is based on the Galaxy platform (homepage: https://galaxyproject.org/). It is an open, web-based platform for data intensive biomedical research. +Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. + + +Configuration +----------- + +### Requirement: + * R software: version > 3.0.0 recommended + * Specific R libraries: 'batch', 'ggplot2' and 'reshape2' + + +Technical description +----------- + +Main files: + +- Corr_Script_samples_row.R: R function (core script) +- Corr_wrap.R: R script to link the main R function to inputs +- Corr.xml: XML wrapper (interface for Galaxy) + + +Services provided +----------- + + * Help and support: support@workflow4metabolomics.org