Mercurial > repos > melpetera > generic_filter
comparison GalFilter/README.md @ 3:cfd7c4aa5c26 draft default tip
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author | melpetera |
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date | Fri, 03 Jan 2020 04:09:28 -0500 |
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1 Generic Filter | |
2 ======= | |
3 | |
4 Metadata | |
5 ----------- | |
6 | |
7 * **@name**: Generic Filter | |
8 * **@version**: 2020.01 | |
9 * **@authors**: Marion Landi and Melanie Petera for first version - Maintainer: Melanie Petera (PFEM ; INRAE ; MetaboHUB) | |
10 * **@init date**: 2014, december | |
11 * **@main usage**: This tool allows to remove all samples and/or variables corresponding to specific values regarding designated factors or numerical variables. | |
12 | |
13 | |
14 Context | |
15 ----------- | |
16 | |
17 This tool is provided as one of the [Workflow4Metabolomics](http://workflow4metabolomics.org) Galaxy instance utilities. W4M is a French infrastructure providing software tools to process, analyse and annotate metabolomics data. | |
18 | |
19 User interface is based on the Galaxy platform (homepage: https://galaxyproject.org/). It is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. | |
20 | |
21 | |
22 Configuration | |
23 ----------- | |
24 | |
25 ### Requirement: | |
26 * R software: version > 3.0.0 recommended | |
27 * Specific R library: 'batch' | |
28 | |
29 ### Docker: | |
30 * Use of this tool in a docker context: | |
31 Information is provided in the [about_docker.md file](about_docker.md). | |
32 | |
33 | |
34 Technical description | |
35 ----------- | |
36 | |
37 Main files: | |
38 | |
39 - filter_script.R: R function (core script) | |
40 - filter_wrap.R: R script to link the main R function to inputs | |
41 - generic_filter.xml: XML wrapper (interface for Galaxy) | |
42 | |
43 | |
44 Services provided | |
45 ----------- | |
46 | |
47 * Help and support: support@workflow4metabolomics.org | |
48 | |
49 | |
50 License | |
51 ----------- | |
52 | |
53 * Cea Cnrs Inria Logiciel Libre License, version 2.1 (CECILL-2.1) |