Mercurial > repos > melpetera > generic_filter
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author | melpetera |
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date | Fri, 03 Jan 2020 04:09:28 -0500 |
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Generic Filter ======= Metadata ----------- * **@name**: Generic Filter * **@version**: 2020.01 * **@authors**: Marion Landi and Melanie Petera for first version - Maintainer: Melanie Petera (PFEM ; INRAE ; MetaboHUB) * **@init date**: 2014, december * **@main usage**: This tool allows to remove all samples and/or variables corresponding to specific values regarding designated factors or numerical variables. Context ----------- This tool is provided as one of the [Workflow4Metabolomics](http://workflow4metabolomics.org) Galaxy instance utilities. W4M is a French infrastructure providing software tools to process, analyse and annotate metabolomics data. User interface is based on the Galaxy platform (homepage: https://galaxyproject.org/). It is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. Configuration ----------- ### Requirement: * R software: version > 3.0.0 recommended * Specific R library: 'batch' ### Docker: * Use of this tool in a docker context: Information is provided in the [about_docker.md file](about_docker.md). Technical description ----------- Main files: - filter_script.R: R function (core script) - filter_wrap.R: R script to link the main R function to inputs - generic_filter.xml: XML wrapper (interface for Galaxy) Services provided ----------- * Help and support: support@workflow4metabolomics.org License ----------- * Cea Cnrs Inria Logiciel Libre License, version 2.1 (CECILL-2.1)