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comparison IDchoice/IDchoice.xml @ 1:bb19b1d15732 draft default tip

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author melpetera
date Thu, 19 Dec 2019 05:29:57 -0500
parents b7a6a88f518a
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0:b7a6a88f518a 1:bb19b1d15732
1 <tool id="idchoice" name="ID choice" version="18.01"> 1 <tool id="idchoice" name="ID choice" version="19.12">
2 <description>Choosing a particular column in your metadata to be considered as Identifiers</description> 2 <description>Choosing a particular column in your metadata to be considered as Identifiers</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.1_4">r-batch</requirement> 4 <requirement type="package" version="1.1_4">r-batch</requirement>
5 </requirements> 5 </requirements>
6 <command interpreter="Rscript"> 6 <command interpreter="Rscript">
104 104
105 Metadata file is meant to be chosen from sample metadata and variable metadata files. 105 Metadata file is meant to be chosen from sample metadata and variable metadata files.
106 | It should include a column containing your wanted IDs. 106 | It should include a column containing your wanted IDs.
107 | 107 |
108 108
109 ---------- 109 -----------
110 Parameter 110 Parameters
111 ---------- 111 -----------
112 112
113 Which ID do you want to change? 113 Which ID do you want to change?
114 | This must be consistant with the metadata file you chose as input 114 | This must be consistant with the metadata file you chose as input
115 | 115 |
116 116
122 | If no (default value), if your ID column does not contain unique values, it will stop the process and send you back an explicit error. 122 | If no (default value), if your ID column does not contain unique values, it will stop the process and send you back an explicit error.
123 | If yes, non-unique values will be converted by adding "_x" at the end of concerned IDs. 123 | If yes, non-unique values will be converted by adding "_x" at the end of concerned IDs.
124 | 124 |
125 125
126 126
127 ------------ 127 -------------
128 Output file 128 Output files
129 ------------ 129 -------------
130 130
131 ID_metadata 131 ID_metadata
132 | tabular output 132 | tabular output
133 | Corresponds to the input metadata file with new IDs as first column 133 | Corresponds to the input metadata file with new IDs as first column
134 | 134 |