diff IDchoice/README.md @ 0:b7a6a88f518a draft

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author melpetera
date Thu, 11 Oct 2018 05:47:29 -0400
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+ID choice
+=======
+
+Metadata
+-----------
+
+ * **@name**: ID choice
+ * **@version**: 17.11
+ * **@authors**: Melanie Petera - PFEM ; INRA ; MetaboHUB 
+ * **@init date**: 2017/06/07
+ * **@main usage**: This tool is designed to make you choose a particular column in your metadata file to be considered as identifiers for your W4M-3-tables-format data. 
+
+ 
+Context
+-----------
+
+This tool is one of the [Workflow4Metabolomics](http://workflow4metabolomics.org) Galaxy instance utilities. W4M is a French infrastructure providing software tools to process, analyse and annotate metabolomics data. 
+
+User interface is based on the Galaxy platform (homepage: https://galaxyproject.org/). It is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
+
+ 
+Configuration
+-----------
+
+### Requirement:
+ * R software: version > 3.0.0 recommended
+ * Specific R library: 'batch'
+ * Submodule: [easyRlibrary](https://github.com/workflow4metabolomics/easyrlibrary-lib) (Required for internal input quality checks)
+
+### Deploy:
+ * [get project data](https://github.com/workflow4metabolomics/idchoice)
+ * How to get the submodule files:
+When pulling this module's Git repository, you may only obtain an empty folder for the needed submodule.
+You can initialise it then with the following command:
+```bash
+git submodule update --init --recursive
+```
+
+
+Travis test
+-----------
+
+[![Build Status](https://travis-ci.org/workflow4metabolomics/idchoice.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/idchoice)
+Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes!
+
+
+Technical description
+-----------
+
+Main files:
+
+- IDchoice_script.R: R function (core script)
+- IDchoice_wrap.R: R script to link the main R function to inputs
+- IDchoice.xml: XML wrapper (interface for Galaxy)
+
+
+Services provided
+-----------
+
+ * Help and support: support@workflow4metabolomics.org