Mercurial > repos > melpetera > intensity_checks
diff README.md @ 7:00181e66c50f draft default tip
planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics commit 689ab2a3db06eeed6a190f3cfa1618b9d9b7b07b
author | workflow4metabolomics |
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date | Wed, 09 Jul 2025 15:43:29 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.md Wed Jul 09 15:43:29 2025 +0000 @@ -0,0 +1,52 @@ +Intensity check +======= + +Metadata +----------- + + * **@name**: Intensity check + * **@version**: 2.0.0 + * **@authors**: Original code: Anthony Fernandes (PFEM - INRA) - Maintainer: Melanie Petera (PFEM - INRAE - MetaboHUB) + * **@contributors**: Wrapper update/refactoring: Helge Hecht + * **@init date**: 2018, September + * **@main usage**: This tool computes some statistical measures, number of missing values and mean fold change. + + +Context +----------- + +This tool is provided as one of the [Workflow4Metabolomics](http://workflow4metabolomics.org) Galaxy instance statistical tools. +W4M is a French infrastructure providing software tools to process, analyse and annotate metabolomics data. + +User interface is based on the Galaxy platform (homepage: https://galaxyproject.org/). It is an open, web-based platform for data intensive biomedical research. +Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. + + +Configuration +----------- + +### Requirement: + * R software: version > 3.0.0 recommended + * Specific R libraries: 'argparse' (for the Galaxy wrapper only) + + +Technical description +----------- + +Main files: + +- Script_intensity_check.R: R function (core script) +- wrapper_intensity_check.R: R script to link the main R function to inputs +- xml_intensity_check.xml: XML wrapper (interface for Galaxy) + + +Services provided +----------- + + * Help and support: https://community.france-bioinformatique.fr/c/workflow4metabolomics/10 + + +License +----------- + + * Cea Cnrs Inria Logiciel Libre License, version 2.1 (CECILL-2.1)