Mercurial > repos > metaboflow_cam > dimsp
changeset 1:b8b3148de013 draft
Deleted selected files
| author | metaboflow_cam |
|---|---|
| date | Tue, 22 Oct 2019 03:49:25 -0400 |
| parents | 77457f03804a |
| children | a8155d5840e9 |
| files | dimsp |
| diffstat | 1 files changed, 0 insertions(+), 1174 deletions(-) [+] |
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<div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> - <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 12 16" version="1.1" role="img"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg> - <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 15 16" version="1.1" role="img"><path fill-rule="evenodd" d="M10 12h3V2h-3v10zm-4-2h3V2H6v8zm-4 4h3V2H2v12zm-1 1h13V1H1v14zM14 0H1a1 1 0 00-1 1v14a1 1 0 001 1h13a1 1 0 001-1V1a1 1 0 00-1-1z"/></svg> - <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M15.7 13.3l-3.81-3.83A5.93 5.93 0 0013 6c0-3.31-2.69-6-6-6S1 2.69 1 6s2.69 6 6 6c1.3 0 2.48-.41 3.47-1.11l3.83 3.81c.19.2.45.3.7.3.25 0 .52-.09.7-.3a.996.996 0 000-1.41v.01zM7 10.7c-2.59 0-4.7-2.11-4.7-4.7 0-2.59 2.11-4.7 4.7-4.7 2.59 0 4.7 2.11 4.7 4.7 0 2.59-2.11 4.7-4.7 4.7z"/></svg> - </div> - - <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> - - <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> - </div> - - <div class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none js-jump-to-badge-search"> - <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> - In this repository - </span> - <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> - All GitHub - </span> - <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> - </div> - - <div aria-hidden="true" class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> - Jump to - <span class="d-inline-block ml-1 v-align-middle">↵</span> - </div> - </a> -</li> - -</ul> - -<ul class="d-none js-jump-to-no-results-template-container"> - <li class="d-flex flex-justify-center flex-items-center f5 d-none js-jump-to-suggestion p-2"> - <span class="text-gray">No suggested jump to results</span> - </li> -</ul> - -<ul id="jump-to-results" role="listbox" class="p-0 m-0 js-navigation-container jump-to-suggestions-results-container js-jump-to-suggestions-results-container"> - - -<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-scoped-search d-none" role="option"> - <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href=""> - <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> - <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 12 16" version="1.1" role="img"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg> - <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 15 16" version="1.1" role="img"><path fill-rule="evenodd" d="M10 12h3V2h-3v10zm-4-2h3V2H6v8zm-4 4h3V2H2v12zm-1 1h13V1H1v14zM14 0H1a1 1 0 00-1 1v14a1 1 0 001 1h13a1 1 0 001-1V1a1 1 0 00-1-1z"/></svg> - <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M15.7 13.3l-3.81-3.83A5.93 5.93 0 0013 6c0-3.31-2.69-6-6-6S1 2.69 1 6s2.69 6 6 6c1.3 0 2.48-.41 3.47-1.11l3.83 3.81c.19.2.45.3.7.3.25 0 .52-.09.7-.3a.996.996 0 000-1.41v.01zM7 10.7c-2.59 0-4.7-2.11-4.7-4.7 0-2.59 2.11-4.7 4.7-4.7 2.59 0 4.7 2.11 4.7 4.7 0 2.59-2.11 4.7-4.7 4.7z"/></svg> - </div> - - <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> - - <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> - </div> - - <div class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none js-jump-to-badge-search"> - <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> - In this repository - </span> - <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> - All GitHub - </span> - <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> - </div> - - <div aria-hidden="true" class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> - Jump to - <span class="d-inline-block ml-1 v-align-middle">↵</span> - </div> - </a> -</li> - - - -<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-global-search d-none" role="option"> - <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href=""> - <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> - <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 12 16" version="1.1" role="img"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg> - <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 15 16" version="1.1" role="img"><path fill-rule="evenodd" d="M10 12h3V2h-3v10zm-4-2h3V2H6v8zm-4 4h3V2H2v12zm-1 1h13V1H1v14zM14 0H1a1 1 0 00-1 1v14a1 1 0 001 1h13a1 1 0 001-1V1a1 1 0 00-1-1z"/></svg> - <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M15.7 13.3l-3.81-3.83A5.93 5.93 0 0013 6c0-3.31-2.69-6-6-6S1 2.69 1 6s2.69 6 6 6c1.3 0 2.48-.41 3.47-1.11l3.83 3.81c.19.2.45.3.7.3.25 0 .52-.09.7-.3a.996.996 0 000-1.41v.01zM7 10.7c-2.59 0-4.7-2.11-4.7-4.7 0-2.59 2.11-4.7 4.7-4.7 2.59 0 4.7 2.11 4.7 4.7 0 2.59-2.11 4.7-4.7 4.7z"/></svg> - </div> - - <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> - - <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> - </div> - - <div class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none js-jump-to-badge-search"> - <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> - In this repository - </span> - <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> - All GitHub - </span> - <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> - </div> - - <div aria-hidden="true" class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> - Jump to - <span class="d-inline-block ml-1 v-align-middle">↵</span> - </div> - </a> -</li> - - -</ul> - - </div> - </label> -</form> </div> -</div> - - </div> - - <a href="/login?return_to=%2Fwanchanglin%2Fdimsp" - class="HeaderMenu-link no-underline mr-3" - data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","client_id":null,"originating_request_id":"9FFE:4E1D:338843:60050C:5DAEB463","originating_url":"https://github.com/wanchanglin/dimsp","referrer":null,"user_id":null}}" data-hydro-click-hmac="068cb693a4b8fb9632a6684790b1cfb63a3f52b5c9b8f22796659e0ba3950f89" - data-ga-click="(Logged out) Header, clicked Sign in, text:sign-in"> - Sign in - </a> - <a href="/join?source_repo=wanchanglin%2Fdimsp" - class="HeaderMenu-link d-inline-block no-underline border border-gray-dark rounded-1 px-2 py-1" - data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","client_id":null,"originating_request_id":"9FFE:4E1D:338843:60050C:5DAEB463","originating_url":"https://github.com/wanchanglin/dimsp","referrer":null,"user_id":null}}" data-hydro-click-hmac="068cb693a4b8fb9632a6684790b1cfb63a3f52b5c9b8f22796659e0ba3950f89" - data-ga-click="(Logged out) Header, clicked Sign up, text:sign-up"> - Sign up - </a> - </div> - </div> - </div> -</header> - - </div> - - <div id="start-of-content" class="show-on-focus"></div> - - - <div id="js-flash-container"> - -</div> - - - - <div class="application-main " data-commit-hovercards-enabled> - <div itemscope itemtype="http://schema.org/SoftwareSourceCode" class=""> - <main id="js-repo-pjax-container" data-pjax-container > - - - - - - - - - - - - - - <div class="pagehead repohead instapaper_ignore readability-menu experiment-repo-nav "> - <div class="repohead-details-container clearfix container"> - - <ul class="pagehead-actions"> - - - - - <li> - - <a class="tooltipped tooltipped-s btn btn-sm btn-with-count" aria-label="You must be signed in to watch a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"notification subscription menu watch","repository_id":null,"auth_type":"LOG_IN","client_id":null,"originating_request_id":"9FFE:4E1D:338843:60050C:5DAEB463","originating_url":"https://github.com/wanchanglin/dimsp","referrer":null,"user_id":null}}" data-hydro-click-hmac="f23ba974c52be60d3a140d01d278f74a04705d0112323ebbb89e00065a008045" href="/login?return_to=%2Fwanchanglin%2Fdimsp"> - <svg class="octicon octicon-eye v-align-text-bottom" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M8.06 2C3 2 0 8 0 8s3 6 8.06 6C13 14 16 8 16 8s-3-6-7.94-6zM8 12c-2.2 0-4-1.78-4-4 0-2.2 1.8-4 4-4 2.22 0 4 1.8 4 4 0 2.22-1.78 4-4 4zm2-4c0 1.11-.89 2-2 2-1.11 0-2-.89-2-2 0-1.11.89-2 2-2 1.11 0 2 .89 2 2z"/></svg> - Watch -</a> <a class="social-count" href="/wanchanglin/dimsp/watchers" - aria-label="1 user is watching this repository"> - 1 - </a> - - </li> - - <li> - <a class="btn btn-sm btn-with-count tooltipped tooltipped-s" aria-label="You must be signed in to star a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"star button","repository_id":143855043,"auth_type":"LOG_IN","client_id":null,"originating_request_id":"9FFE:4E1D:338843:60050C:5DAEB463","originating_url":"https://github.com/wanchanglin/dimsp","referrer":null,"user_id":null}}" data-hydro-click-hmac="c8d4bbcf3991d6cb1735f29fd786f442d1a365af35dac100c1e851819cf20505" href="/login?return_to=%2Fwanchanglin%2Fdimsp"> - <svg class="octicon octicon-star v-align-text-bottom" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M14 6l-4.9-.64L7 1 4.9 5.36 0 6l3.6 3.26L2.67 14 7 11.67 11.33 14l-.93-4.74L14 6z"/></svg> - Star -</a> - <a class="social-count js-social-count" href="/wanchanglin/dimsp/stargazers" - aria-label="0 users starred this repository"> - 0 - </a> - - </li> - - <li> - <a class="btn btn-sm btn-with-count tooltipped tooltipped-s" aria-label="You must be signed in to fork a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"repo details fork button","repository_id":143855043,"auth_type":"LOG_IN","client_id":null,"originating_request_id":"9FFE:4E1D:338843:60050C:5DAEB463","originating_url":"https://github.com/wanchanglin/dimsp","referrer":null,"user_id":null}}" data-hydro-click-hmac="b78ed73347c78a05760d06ac06797ae8f40428114bd3ee842f8c899094f219ff" href="/login?return_to=%2Fwanchanglin%2Fdimsp"> - <svg class="octicon octicon-repo-forked v-align-text-bottom" viewBox="0 0 10 16" version="1.1" width="10" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M8 1a1.993 1.993 0 00-1 3.72V6L5 8 3 6V4.72A1.993 1.993 0 002 1a1.993 1.993 0 00-1 3.72V6.5l3 3v1.78A1.993 1.993 0 005 15a1.993 1.993 0 001-3.72V9.5l3-3V4.72A1.993 1.993 0 008 1zM2 4.2C1.34 4.2.8 3.65.8 3c0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2zm3 10c-.66 0-1.2-.55-1.2-1.2 0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2zm3-10c-.66 0-1.2-.55-1.2-1.2 0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2z"/></svg> - Fork -</a> - <a href="/wanchanglin/dimsp/network/members" class="social-count" - aria-label="1 user forked this repository"> - 1 - </a> - </li> -</ul> - - <h1 class="public "> - <svg class="octicon octicon-repo" viewBox="0 0 12 16" version="1.1" width="12" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg> - <span class="author" itemprop="author"><a class="url fn" rel="author" data-hovercard-type="user" data-hovercard-url="/hovercards?user_id=17029420" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="/wanchanglin">wanchanglin</a></span><!-- ---><span class="path-divider">/</span><!-- ---><strong itemprop="name"><a data-pjax="#js-repo-pjax-container" href="/wanchanglin/dimsp">dimsp</a></strong> - - -</h1> - - </div> - -<nav class="hx_reponav reponav js-repo-nav js-sidenav-container-pjax container" - itemscope - itemtype="http://schema.org/BreadcrumbList" - aria-label="Repository" - data-pjax="#js-repo-pjax-container"> - - <span itemscope itemtype="http://schema.org/ListItem" itemprop="itemListElement"> - <a class="js-selected-navigation-item selected reponav-item" itemprop="url" data-hotkey="g c" aria-current="page" data-selected-links="repo_source repo_downloads repo_commits repo_releases repo_tags repo_branches repo_packages /wanchanglin/dimsp" href="/wanchanglin/dimsp"> - 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<summary class="btn btn-sm ml-2 btn-primary" data-hydro-click="{"event_type":"repository.click","payload":{"repository_id":143855043,"target":"CLONE_OR_DOWNLOAD_BUTTON","client_id":null,"originating_request_id":"9FFE:4E1D:338843:60050C:5DAEB463","originating_url":"https://github.com/wanchanglin/dimsp","referrer":null,"user_id":null}}" data-hydro-click-hmac="d33835c6b1b5b069187abc93e012732c17d26e0fecfb7df7899079b5f7dc53a1"> - Clone or download - <span class="dropdown-caret"></span> -</summary> <div class="position-relative"> - <div class="get-repo-modal dropdown-menu dropdown-menu-sw pb-0 js-toggler-container js-get-repo-modal"> - - <div class="get-repo-modal-options"> - <div class="clone-options https-clone-options"> - - <h4 class="mb-1"> - Clone with HTTPS - <a class="muted-link" href="https://help.github.com/articles/which-remote-url-should-i-use" target="_blank" title="Which remote URL should I use?"> - <svg class="octicon octicon-question" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M6 10h2v2H6v-2zm4-3.5C10 8.64 8 9 8 9H6c0-.55.45-1 1-1h.5c.28 0 .5-.22.5-.5v-1c0-.28-.22-.5-.5-.5h-1c-.28 0-.5.22-.5.5V7H4c0-1.5 1.5-3 3-3s3 1 3 2.5zM7 2.3c3.14 0 5.7 2.56 5.7 5.7s-2.56 5.7-5.7 5.7A5.71 5.71 0 011.3 8c0-3.14 2.56-5.7 5.7-5.7zM7 1C3.14 1 0 4.14 0 8s3.14 7 7 7 7-3.14 7-7-3.14-7-7-7z"/></svg> - </a> - </h4> - <p class="mb-2 get-repo-decription-text"> - Use Git or checkout with SVN using the web URL. - </p> - - <div class="input-group"> - <input type="text" class="form-control input-monospace input-sm" data-autoselect value="https://github.com/wanchanglin/dimsp.git" aria-label="Clone this repository at https://github.com/wanchanglin/dimsp.git" readonly> - <div class="input-group-button"> - <clipboard-copy value="https://github.com/wanchanglin/dimsp.git" aria-label="Copy to clipboard" class="btn btn-sm" data-hydro-click="{"event_type":"clone_or_download.click","payload":{"feature_clicked":"COPY_URL","git_repository_type":"REPOSITORY","repository_id":143855043,"client_id":null,"originating_request_id":"9FFE:4E1D:338843:60050C:5DAEB463","originating_url":"https://github.com/wanchanglin/dimsp","referrer":null,"user_id":null}}" data-hydro-click-hmac="63d239fe0c92f11739d2517dfd563dcf2ac529d59aee24f5773c23e165bf2779"><svg class="octicon octicon-clippy" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M2 13h4v1H2v-1zm5-6H2v1h5V7zm2 3V8l-3 3 3 3v-2h5v-2H9zM4.5 9H2v1h2.5V9zM2 12h2.5v-1H2v1zm9 1h1v2c-.02.28-.11.52-.3.7-.19.18-.42.28-.7.3H1c-.55 0-1-.45-1-1V4c0-.55.45-1 1-1h3c0-1.11.89-2 2-2 1.11 0 2 .89 2 2h3c.55 0 1 .45 1 1v5h-1V6H1v9h10v-2zM2 5h8c0-.55-.45-1-1-1H8c-.55 0-1-.45-1-1s-.45-1-1-1-1 .45-1 1-.45 1-1 1H3c-.55 0-1 .45-1 1z"/></svg></clipboard-copy> - 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README.md - </h3> - </div> - <div class="Popover anim-scale-in js-tagsearch-popover" - hidden - data-tagsearch-url="/wanchanglin/dimsp/find-symbols" - data-tagsearch-ref="master" - data-tagsearch-path="README.md" - data-tagsearch-lang="Markdown" - data-hydro-click="{"event_type":"code_navigation.click_on_symbol","payload":{"action":"click_on_symbol","repository_id":143855043,"ref":"master","client_id":null,"originating_request_id":"9FFE:4E1D:338843:60050C:5DAEB463","originating_url":"https://github.com/wanchanglin/dimsp","referrer":null,"user_id":null}}" - data-hydro-click-hmac="dc1ca5f820145596e9037ebd99c853d103f2cb9ae0d54951e1c4bf344bff5e65"> - <div class="Popover-message Popover-message--large Popover-message--top-left TagsearchPopover mt-1 mb-4 mx-auto Box box-shadow-large"> - <div class="TagsearchPopover-content js-tagsearch-popover-content overflow-auto" style="will-change:transform;"> - </div> - </div> -</div> - - <div class="Box-body"> - <article class="markdown-body entry-content p-5" itemprop="text"><h1><a id="user-content-dimsp-for-galaxy" class="anchor" aria-hidden="true" href="#dimsp-for-galaxy"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>DIMSP for Galaxy</h1> -<p>Galaxy tool for Direct-Infusion Mass Spectrometry (DIMS) based lipidomics -data processing and filtering.</p> -<p>For details how to get annotation and peak table, see -<a href="https://github.com/hallz/dims_processing">dims_processing</a>.</p> -<h2><a id="user-content-installation" class="anchor" aria-hidden="true" href="#installation"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Installation</h2> -<ul> -<li> -<p>Install <a href="https://github.com/galaxyproject/galaxy">Galaxy</a> under Linux.</p> -</li> -<li> -<p>Install <a href="https://docs.conda.io/en/latest/miniconda.html" rel="nofollow">conda</a> under -Linux. <code>conda</code> is used to install <code>requirements</code> of this tool, i.e. R -packages used: <code>optparse</code>, <code>WriteXLS</code>, <code>xcms</code>, <code>data.table</code>, -<code>reshape</code>, <code>lattice</code>, <code>impute</code> and <code>pcaMethods</code>.</p> -</li> -<li> -<p>Use <code>git</code> to clone this tool</p> -<div class="highlight highlight-source-shell"><pre>git clone https://github.com/wanchanglin/dimsp.git</pre></div> -</li> -<li> -<p>Add this tool's location into Galaxy' tool config file: -<code>~/Galaxy/config/tool_conf.xml</code>. For example, one simplified -<code>tool_conf.xml</code> looks like:</p> -<div class="highlight highlight-text-xml"><pre><?<span class="pl-ent">xml</span><span class="pl-e"> version</span>=<span class="pl-s"><span class="pl-pds">'</span>1.0<span class="pl-pds">'</span></span><span class="pl-e"> encoding</span>=<span class="pl-s"><span class="pl-pds">'</span>utf-8<span class="pl-pds">'</span></span>?> -<<span class="pl-ent">toolbox</span> <span class="pl-e">monitor</span>=<span class="pl-s"><span class="pl-pds">"</span>true<span class="pl-pds">"</span></span>> - - <<span class="pl-ent">section</span> <span class="pl-e">id</span>=<span class="pl-s"><span class="pl-pds">"</span>getext<span class="pl-pds">"</span></span> <span class="pl-e">name</span>=<span class="pl-s"><span class="pl-pds">"</span>Get Data<span class="pl-pds">"</span></span>> - <<span class="pl-ent">tool</span> <span class="pl-e">file</span>=<span class="pl-s"><span class="pl-pds">"</span>data_source/upload.xml<span class="pl-pds">"</span></span> /> - </<span class="pl-ent">section</span>> - - <<span class="pl-ent">section</span> <span class="pl-e">id</span>=<span class="pl-s"><span class="pl-pds">"</span>MyTools<span class="pl-pds">"</span></span> <span class="pl-e">name</span>=<span class="pl-s"><span class="pl-pds">"</span>My Tools<span class="pl-pds">"</span></span>> - <<span class="pl-ent">tool</span> <span class="pl-e">file</span>=<span class="pl-s"><span class="pl-pds">"</span>/path/to/dimsp/dimsp.xml<span class="pl-pds">"</span></span> /> - <<span class="pl-ent">tool</span> <span class="pl-e">file</span>=<span class="pl-s"><span class="pl-pds">"</span>/path/to/dimsp/dimsp_filter.xml<span class="pl-pds">"</span></span> /> - </<span class="pl-ent">section</span>> - -</<span class="pl-ent">toolbox</span>></pre></div> -</li> -<li> -<p>Test data are in <code>test-data</code>, includes:</p> -<ul> -<li>mzXML and mzML files for DIMSP processing.</li> -<li>Lipid lists in TSV(Tab Separated Values) format.</li> -<li>TSV files for DIMSP filtering.</li> -</ul> -</li> -</ul> -<h2><a id="user-content-authors-contributors--contacts" class="anchor" aria-hidden="true" href="#authors-contributors--contacts"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Authors, contributors & contacts</h2> -<ul> -<li>Wanchang Lin (<a href="mailto:wl361@cam.ac.uk">wl361@cam.ac.uk</a>), University of Cambridge</li> -<li>Zoe Hall (<a href="mailto:zlh22@cam.ac.uk">zlh22@cam.ac.uk</a>), University of Cambridge</li> -<li>Julian L Griffin (<a href="mailto:jlg40@cam.ac.uk">jlg40@cam.ac.uk</a>), University of Cambridge</li> -</ul> -</article> - 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