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1 <macros>
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2 <xml name="requirements">
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3 <requirements>
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4 <requirement type="package" version="1.6.6">r-optparse</requirement>
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5 <requirement type="package" version="1.4.4">r-reshape2</requirement>
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6 <requirement type="package" version="1.8.6">r-plyr</requirement>
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7 <requirement type="package" version="1.0.6">r-dplyr</requirement>
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8 <requirement type="package" version="1.1.3">r-tidyr</requirement>
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9 <requirement type="package" version="3.3.3">r-ggplot2</requirement>
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10 <requirement type="package" version="0.9.1">r-ggrepel</requirement>
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11 <requirement type="package" version="0.89">r-corrplot</requirement>
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12 <requirement type="package" version="3.1.1">r-gplots</requirement>
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13 <requirement type="package" version="1.16.1">r-network</requirement>
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14 <requirement type="package" version="2.6">r-sna</requirement>
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15 <requirement type="package" version="2.1.1">r-ggally</requirement>
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16 <requirement type="package" version="3.13.0">bioconductor-go.db</requirement>
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17 <requirement type="package" version="2.58.0">bioconductor-gostats</requirement>
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18 <requirement type="package" version="1.0.12">r-pheatmap</requirement>
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19 <requirement type="package" version="1.2.6">r-igraph</requirement>
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20 <requirement type="package" version="3.2.4">bioconductor-kegg.db</requirement>
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21 <requirement type="package" version="3.13.0">bioconductor-org.sc.sgd.db</requirement>
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22 <requirement type="package" version="3.13.0">bioconductor-org.hs.eg.db</requirement>
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23 </requirements>
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24 </xml>
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25 <xml name="stdio">
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26 <stdio>
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27 <regex match="Execution halted"
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28 source="both"
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29 level="fatal"
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30 description="Execution halted." />
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31 <regex match="Error in"
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32 source="both"
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33 level="fatal"
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34 description="An undefined error occurred, please check your input
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35 carefully and contact your administrator." />
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36 <regex match="Fatal error"
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37 source="both"
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38 level="fatal"
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39 description="An undefined error occurred, please check your input
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40 carefully and contact your administrator." />
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41 </stdio>
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42 </xml>
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43
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44 </macros>
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