Mercurial > repos > metaboflow_cam > masspix
diff massPix @ 0:dada1f17021d draft
Uploaded
| author | metaboflow_cam |
|---|---|
| date | Tue, 24 Sep 2019 04:37:32 -0400 |
| parents | |
| children |
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Header, go to Topics">Topics</a></li> + <li class="edge-item-fix"><a href="/collections" class="py-2 lh-condensed-ultra d-block link-gray no-underline f5" data-ga-click="(Logged out) Header, go to Collections">Collections</a></li> + <li class="edge-item-fix"><a href="/trending" class="py-2 lh-condensed-ultra d-block link-gray no-underline f5" data-ga-click="(Logged out) Header, go to Trending">Trending</a></li> + <li class="edge-item-fix"><a href="https://lab.github.com/" class="py-2 lh-condensed-ultra d-block link-gray no-underline f5" data-ga-click="(Logged out) Header, go to Learning lab">Learning Lab</a></li> + <li class="edge-item-fix"><a href="https://opensource.guide" class="py-2 lh-condensed-ultra d-block link-gray no-underline f5" data-ga-click="(Logged out) Header, go to Open source guides">Open source guides</a></li> + </ul> + + <h4 class="text-gray-light text-normal text-mono f5 mb-2 border-top pt-3">Connect with others</h4> + <ul class="list-style-none mb-0"> + <li 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class="HeaderMenu-details details-overlay details-reset width-full"> + <summary class="HeaderMenu-summary HeaderMenu-link px-0 py-3 border-0 no-wrap d-inline-block"> + Pricing + <svg x="0px" y="0px" viewBox="0 0 14 8" xml:space="preserve" fill="none" class="icon-chevon-down-mktg position-relative"> + <path d="M1,1l6.2,6L13,1"></path> + </svg> + </summary> + + <div class="dropdown-menu flex-auto rounded-1 bg-white px-0 pt-2 pb-4 mt-0 p-4 left-n4 position-absolute"> + <a href="/pricing" class="pb-2 lh-condensed-ultra d-block link-gray-dark no-underline h5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Pricing">Plans <span class="Bump-link-symbol float-right text-normal text-gray-light">→</span></a> + + <ul class="list-style-none mb-3"> + <li class="edge-item-fix"><a href="/pricing#feature-comparison" class="py-2 lh-condensed-ultra d-block link-gray no-underline f5" data-ga-click="(Logged out) Header, go to Compare plans">Compare plans</a></li> + <li class="edge-item-fix"><a 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text-left"> + <div class="d-lg-flex "> + <div class="header-search mr-3 scoped-search site-scoped-search js-site-search position-relative js-jump-to" + role="combobox" + aria-owns="jump-to-results" + aria-label="Search or jump to" + aria-haspopup="listbox" + aria-expanded="false" +> + <div class="position-relative"> + <!-- '"` --><!-- </textarea></xmp> --></option></form><form class="js-site-search-form" role="search" aria-label="Site" data-scope-type="Repository" data-scope-id="130720555" data-scoped-search-url="/wanchanglin/massPix/search" data-unscoped-search-url="/search" action="/wanchanglin/massPix/search" accept-charset="UTF-8" method="get"><input name="utf8" type="hidden" value="✓" /> + <label class="form-control input-sm header-search-wrapper p-0 header-search-wrapper-jump-to position-relative d-flex flex-justify-between flex-items-center js-chromeless-input-container"> + <input type="text" + class="form-control input-sm header-search-input jump-to-field js-jump-to-field js-site-search-focus js-site-search-field is-clearable" + data-hotkey="s,/" + name="q" + value="" + placeholder="Search" + data-unscoped-placeholder="Search GitHub" + data-scoped-placeholder="Search" + autocapitalize="off" + aria-autocomplete="list" + aria-controls="jump-to-results" + aria-label="Search" + data-jump-to-suggestions-path="/_graphql/GetSuggestedNavigationDestinations#csrf-token=nH1JrGXE5pya4aAU63VWGrAsd4xnmYBLv60ZuAoFE9I9c+qIygmwuQybUG3IIKF9JIF7Ks11LloWC/ULrRFzpg==" + spellcheck="false" + autocomplete="off" + > + <input type="hidden" class="js-site-search-type-field" name="type" > + <img src="https://github.githubassets.com/images/search-key-slash.svg" alt="" class="mr-2 header-search-key-slash"> + + <div class="Box position-absolute overflow-hidden d-none jump-to-suggestions js-jump-to-suggestions-container"> + +<ul class="d-none js-jump-to-suggestions-template-container"> + + +<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-suggestion" role="option"> + <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href=""> + <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> + <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 12 16" version="1.1" role="img"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg> + <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 15 16" version="1.1" role="img"><path fill-rule="evenodd" d="M10 12h3V2h-3v10zm-4-2h3V2H6v8zm-4 4h3V2H2v12zm-1 1h13V1H1v14zM14 0H1a1 1 0 0 0-1 1v14a1 1 0 0 0 1 1h13a1 1 0 0 0 1-1V1a1 1 0 0 0-1-1z"/></svg> + <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M15.7 13.3l-3.81-3.83A5.93 5.93 0 0 0 13 6c0-3.31-2.69-6-6-6S1 2.69 1 6s2.69 6 6 6c1.3 0 2.48-.41 3.47-1.11l3.83 3.81c.19.2.45.3.7.3.25 0 .52-.09.7-.3a.996.996 0 0 0 0-1.41v.01zM7 10.7c-2.59 0-4.7-2.11-4.7-4.7 0-2.59 2.11-4.7 4.7-4.7 2.59 0 4.7 2.11 4.7 4.7 0 2.59-2.11 4.7-4.7 4.7z"/></svg> + </div> + + <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> + + <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> + </div> + + <div class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none js-jump-to-badge-search"> + <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> + In this repository + </span> + <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> + All GitHub + </span> + <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + + <div aria-hidden="true" class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> + Jump to + <span class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + </a> +</li> + +</ul> + +<ul class="d-none js-jump-to-no-results-template-container"> + <li class="d-flex flex-justify-center flex-items-center f5 d-none js-jump-to-suggestion p-2"> + <span class="text-gray">No suggested jump to results</span> + </li> +</ul> + +<ul id="jump-to-results" role="listbox" class="p-0 m-0 js-navigation-container jump-to-suggestions-results-container js-jump-to-suggestions-results-container"> + + +<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-scoped-search d-none" role="option"> + <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href=""> + <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> + <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 12 16" version="1.1" role="img"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg> + <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 15 16" version="1.1" role="img"><path fill-rule="evenodd" d="M10 12h3V2h-3v10zm-4-2h3V2H6v8zm-4 4h3V2H2v12zm-1 1h13V1H1v14zM14 0H1a1 1 0 0 0-1 1v14a1 1 0 0 0 1 1h13a1 1 0 0 0 1-1V1a1 1 0 0 0-1-1z"/></svg> + <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M15.7 13.3l-3.81-3.83A5.93 5.93 0 0 0 13 6c0-3.31-2.69-6-6-6S1 2.69 1 6s2.69 6 6 6c1.3 0 2.48-.41 3.47-1.11l3.83 3.81c.19.2.45.3.7.3.25 0 .52-.09.7-.3a.996.996 0 0 0 0-1.41v.01zM7 10.7c-2.59 0-4.7-2.11-4.7-4.7 0-2.59 2.11-4.7 4.7-4.7 2.59 0 4.7 2.11 4.7 4.7 0 2.59-2.11 4.7-4.7 4.7z"/></svg> + </div> + + <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> + + <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> + </div> + + <div class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none js-jump-to-badge-search"> + <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> + In this repository + </span> + <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> + All GitHub + </span> + <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + + <div aria-hidden="true" class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> + Jump to + <span class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + </a> +</li> + + + +<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-global-search d-none" role="option"> + <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href=""> + <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> + <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 12 16" version="1.1" role="img"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg> + <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 15 16" version="1.1" role="img"><path fill-rule="evenodd" d="M10 12h3V2h-3v10zm-4-2h3V2H6v8zm-4 4h3V2H2v12zm-1 1h13V1H1v14zM14 0H1a1 1 0 0 0-1 1v14a1 1 0 0 0 1 1h13a1 1 0 0 0 1-1V1a1 1 0 0 0-1-1z"/></svg> + <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M15.7 13.3l-3.81-3.83A5.93 5.93 0 0 0 13 6c0-3.31-2.69-6-6-6S1 2.69 1 6s2.69 6 6 6c1.3 0 2.48-.41 3.47-1.11l3.83 3.81c.19.2.45.3.7.3.25 0 .52-.09.7-.3a.996.996 0 0 0 0-1.41v.01zM7 10.7c-2.59 0-4.7-2.11-4.7-4.7 0-2.59 2.11-4.7 4.7-4.7 2.59 0 4.7 2.11 4.7 4.7 0 2.59-2.11 4.7-4.7 4.7z"/></svg> + </div> + + <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> + + <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> + </div> + + <div class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none js-jump-to-badge-search"> + <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> + In this repository + </span> + <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> + All GitHub + </span> + <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + + <div aria-hidden="true" class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> + Jump to + <span class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + </a> +</li> + + +</ul> + + </div> + </label> +</form> </div> +</div> + + </div> + + <a href="/login?return_to=%2Fwanchanglin%2FmassPix" + class="HeaderMenu-link no-underline mr-3" + data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","client_id":null,"originating_request_id":"DF32:5384:1AA2DF:2A8C80:5D89D5CB","originating_url":"https://github.com/wanchanglin/massPix","referrer":null,"user_id":null}}" data-hydro-click-hmac="78dc3d66e2250d5b1fb8a15796f75869985451efd2ec5b3068f22621a3f36126" + data-ga-click="(Logged out) Header, clicked Sign in, text:sign-in"> + Sign in + </a> + <a href="/join" + class="HeaderMenu-link d-inline-block no-underline border border-gray-dark rounded-1 px-2 py-1" + data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","client_id":null,"originating_request_id":"DF32:5384:1AA2DF:2A8C80:5D89D5CB","originating_url":"https://github.com/wanchanglin/massPix","referrer":null,"user_id":null}}" data-hydro-click-hmac="78dc3d66e2250d5b1fb8a15796f75869985451efd2ec5b3068f22621a3f36126" + data-ga-click="(Logged out) Header, clicked Sign up, text:sign-up"> + Sign up + </a> + </div> + </div> + </div> +</header> + + </div> + + <div id="start-of-content" class="show-on-focus"></div> + + + <div id="js-flash-container"> + +</div> + + + + <div class="application-main " data-commit-hovercards-enabled> + <div itemscope itemtype="http://schema.org/SoftwareSourceCode" class=""> + <main id="js-repo-pjax-container" data-pjax-container > + + + + + + + + + + + + + <div class="pagehead repohead instapaper_ignore readability-menu experiment-repo-nav "> + <div class="repohead-details-container clearfix container"> + + <ul class="pagehead-actions"> + + + + + <li> + + <a class="tooltipped tooltipped-s btn btn-sm btn-with-count" aria-label="You must be signed in to watch a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"notification subscription menu watch","repository_id":null,"auth_type":"LOG_IN","client_id":null,"originating_request_id":"DF32:5384:1AA2DF:2A8C80:5D89D5CB","originating_url":"https://github.com/wanchanglin/massPix","referrer":null,"user_id":null}}" data-hydro-click-hmac="2a2cc8ac5c3a47d5efb118fd2229e2c564f056fca2f64c8500f376a6cfc8aa9e" href="/login?return_to=%2Fwanchanglin%2FmassPix"> + <svg class="octicon octicon-eye v-align-text-bottom" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M8.06 2C3 2 0 8 0 8s3 6 8.06 6C13 14 16 8 16 8s-3-6-7.94-6zM8 12c-2.2 0-4-1.78-4-4 0-2.2 1.8-4 4-4 2.22 0 4 1.8 4 4 0 2.22-1.78 4-4 4zm2-4c0 1.11-.89 2-2 2-1.11 0-2-.89-2-2 0-1.11.89-2 2-2 1.11 0 2 .89 2 2z"/></svg> + Watch +</a> <a class="social-count" href="/wanchanglin/massPix/watchers" + aria-label="1 user is watching this repository"> + 1 + </a> + + </li> + + <li> + <a class="btn btn-sm btn-with-count tooltipped tooltipped-s" aria-label="You must be signed in to star a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"star button","repository_id":130720555,"auth_type":"LOG_IN","client_id":null,"originating_request_id":"DF32:5384:1AA2DF:2A8C80:5D89D5CB","originating_url":"https://github.com/wanchanglin/massPix","referrer":null,"user_id":null}}" data-hydro-click-hmac="bf75e8a52a801cdd2a78ddc997be2628ebad5df799ee28ac50506e14f473c125" href="/login?return_to=%2Fwanchanglin%2FmassPix"> + <svg class="octicon octicon-star v-align-text-bottom" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M14 6l-4.9-.64L7 1 4.9 5.36 0 6l3.6 3.26L2.67 14 7 11.67 11.33 14l-.93-4.74L14 6z"/></svg> + Star +</a> + <a class="social-count js-social-count" href="/wanchanglin/massPix/stargazers" + aria-label="1 user starred this repository"> + 1 + </a> + + </li> + + <li> + <a class="btn btn-sm btn-with-count tooltipped tooltipped-s" aria-label="You must be signed in to fork a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"repo details fork button","repository_id":130720555,"auth_type":"LOG_IN","client_id":null,"originating_request_id":"DF32:5384:1AA2DF:2A8C80:5D89D5CB","originating_url":"https://github.com/wanchanglin/massPix","referrer":null,"user_id":null}}" data-hydro-click-hmac="90a72edb9da6cd7dcd5e49c2353a13f11e1fc58ff9cb886a009676f27b5764cf" href="/login?return_to=%2Fwanchanglin%2FmassPix"> + <svg class="octicon octicon-repo-forked v-align-text-bottom" viewBox="0 0 10 16" version="1.1" width="10" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M8 1a1.993 1.993 0 0 0-1 3.72V6L5 8 3 6V4.72A1.993 1.993 0 0 0 2 1a1.993 1.993 0 0 0-1 3.72V6.5l3 3v1.78A1.993 1.993 0 0 0 5 15a1.993 1.993 0 0 0 1-3.72V9.5l3-3V4.72A1.993 1.993 0 0 0 8 1zM2 4.2C1.34 4.2.8 3.65.8 3c0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2zm3 10c-.66 0-1.2-.55-1.2-1.2 0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2zm3-10c-.66 0-1.2-.55-1.2-1.2 0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2z"/></svg> + Fork +</a> + <a href="/wanchanglin/massPix/network/members" class="social-count" + aria-label="1 user forked this repository"> + 1 + </a> + </li> +</ul> + + <h1 class="public "> + <svg class="octicon octicon-repo" viewBox="0 0 12 16" version="1.1" width="12" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg> + <span class="author" itemprop="author"><a class="url fn" rel="author" data-hovercard-type="user" data-hovercard-url="/hovercards?user_id=17029420" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="/wanchanglin">wanchanglin</a></span><!-- +--><span class="path-divider">/</span><!-- +--><strong itemprop="name"><a data-pjax="#js-repo-pjax-container" href="/wanchanglin/massPix">massPix</a></strong> + + +</h1> + + </div> + +<nav class="hx_reponav reponav js-repo-nav js-sidenav-container-pjax container" + itemscope + itemtype="http://schema.org/BreadcrumbList" + aria-label="Repository" + data-pjax="#js-repo-pjax-container"> + + <span itemscope itemtype="http://schema.org/ListItem" itemprop="itemListElement"> + <a class="js-selected-navigation-item selected reponav-item" itemprop="url" data-hotkey="g c" aria-current="page" data-selected-links="repo_source repo_downloads repo_commits repo_releases repo_tags repo_branches repo_packages /wanchanglin/massPix" href="/wanchanglin/massPix"> + <svg class="octicon octicon-code" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M9.5 3L8 4.5 11.5 8 8 11.5 9.5 13 14 8 9.5 3zm-5 0L0 8l4.5 5L6 11.5 2.5 8 6 4.5 4.5 3z"/></svg> + <span itemprop="name">Code</span> + <meta itemprop="position" content="1"> +</a> 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0-6-2.896-6-6.982V2.75zm1 .75L7 2v12c-1.207 0-5-2.482-5-5.985V3.5z"/></svg> + Security +</a> + <a class="js-selected-navigation-item reponav-item" data-selected-links="repo_graphs repo_contributors dependency_graph pulse people /wanchanglin/massPix/pulse" href="/wanchanglin/massPix/pulse"> + <svg class="octicon octicon-graph" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M16 14v1H0V0h1v14h15zM5 13H3V8h2v5zm4 0H7V3h2v10zm4 0h-2V6h2v7z"/></svg> + Insights +</a> + +</nav> + + + </div> +<div class="container-lg clearfix new-discussion-timeline experiment-repo-nav px-3"> + <div class="repository-content "> + + + + <div class="signup-prompt-bg rounded-1"> + <div class="signup-prompt p-4 text-center mb-4 rounded-1"> + <div class="position-relative"> + <!-- '"` --><!-- </textarea></xmp> --></option></form><form action="/prompt_dismissals/signup" accept-charset="UTF-8" method="post"><input name="utf8" type="hidden" value="✓" /><input type="hidden" name="_method" value="put" /><input type="hidden" name="authenticity_token" value="mkM1vpjCDGv1NB1mdsdx9I0UsOFgaoD4/0JONYawHJ4z8H5BUEclmdVGgzd8uM1PqEjYS0OmJKdLRvwbp2prfA==" /> + <button type="submit" class="position-absolute top-0 right-0 btn-link link-gray" data-ga-click="(Logged out) Sign up prompt, clicked Dismiss, text:dismiss"> + Dismiss + </button> +</form> <h3 class="pt-2">Join GitHub today</h3> + <p class="col-6 mx-auto">GitHub is home to over 40 million developers working together to host and review code, manage projects, and build software together.</p> + <a class="btn btn-primary" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"files signup prompt","repository_id":null,"auth_type":"SIGN_UP","client_id":null,"originating_request_id":"DF32:5384:1AA2DF:2A8C80:5D89D5CB","originating_url":"https://github.com/wanchanglin/massPix","referrer":null,"user_id":null}}" data-hydro-click-hmac="755099a90a2b48eb52bace27e7c8d42d176bd5d74cd022ff82d746d1df2ccf64" data-ga-click="(Logged out) Sign up prompt, clicked Sign up, text:sign-up" href="/join?source=prompt-code">Sign up</a> + </div> + </div> + </div> + + + <div class="mb-3"> <div class="f4"> + <em class="d-block text-gray"> + No description, website, or topics provided. + </em> + </div> +</div> + + + + + <div class="overall-summary overall-summary-bottomless"> + <ul class="numbers-summary"> + <li class="commits"> + <a data-pjax href="/wanchanglin/massPix/commits/master"> + <svg class="octicon octicon-history" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M8 13H6V6h5v2H8v5zM7 1C4.81 1 2.87 2.02 1.59 3.59L0 2v4h4L2.5 4.5C3.55 3.17 5.17 2.3 7 2.3c3.14 0 5.7 2.56 5.7 5.7s-2.56 5.7-5.7 5.7A5.71 5.71 0 0 1 1.3 8c0-.34.03-.67.09-1H.08C.03 7.33 0 7.66 0 8c0 3.86 3.14 7 7 7s7-3.14 7-7-3.14-7-7-7z"/></svg> + <span class="num text-emphasized"> + 24 + </span> + commits + </a> + </li> + <li> + <a data-pjax href="/wanchanglin/massPix/branches"> + <svg class="octicon octicon-git-branch" viewBox="0 0 10 16" version="1.1" width="10" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M10 5c0-1.11-.89-2-2-2a1.993 1.993 0 0 0-1 3.72v.3c-.02.52-.23.98-.63 1.38-.4.4-.86.61-1.38.63-.83.02-1.48.16-2 .45V4.72a1.993 1.993 0 0 0-1-3.72C.88 1 0 1.89 0 3a2 2 0 0 0 1 1.72v6.56c-.59.35-1 .99-1 1.72 0 1.11.89 2 2 2 1.11 0 2-.89 2-2 0-.53-.2-1-.53-1.36.09-.06.48-.41.59-.47.25-.11.56-.17.94-.17 1.05-.05 1.95-.45 2.75-1.25S8.95 7.77 9 6.73h-.02C9.59 6.37 10 5.73 10 5zM2 1.8c.66 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2C1.35 4.2.8 3.65.8 3c0-.65.55-1.2 1.2-1.2zm0 12.41c-.66 0-1.2-.55-1.2-1.2 0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2zm6-8c-.66 0-1.2-.55-1.2-1.2 0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2z"/></svg> + <span class="num text-emphasized"> + 1 + </span> + branch + </a> + </li> + + + <li> + <a href="/wanchanglin/massPix/releases"> + <svg class="octicon octicon-tag" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M7.73 1.73C7.26 1.26 6.62 1 5.96 1H3.5C2.13 1 1 2.13 1 3.5v2.47c0 .66.27 1.3.73 1.77l6.06 6.06c.39.39 1.02.39 1.41 0l4.59-4.59a.996.996 0 0 0 0-1.41L7.73 1.73zM2.38 7.09c-.31-.3-.47-.7-.47-1.13V3.5c0-.88.72-1.59 1.59-1.59h2.47c.42 0 .83.16 1.13.47l6.14 6.13-4.73 4.73-6.13-6.15zM3.01 3h2v2H3V3h.01z"/></svg> + <span class="num text-emphasized"> + 0 + </span> + releases + </a> + </li> + + + <li > + <include-fragment src="/wanchanglin/massPix/contributors_size"> + <a href="/wanchanglin/massPix/graphs/contributors"> + <svg class="octicon octicon-organization" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M16 12.999c0 .439-.45 1-1 1H7.995c-.539 0-.994-.447-.995-.999H1c-.54 0-1-.561-1-1 0-2.634 3-4 3-4s.229-.409 0-1c-.841-.621-1.058-.59-1-3 .058-2.419 1.367-3 2.5-3s2.442.58 2.5 3c.058 2.41-.159 2.379-1 3-.229.59 0 1 0 1s1.549.711 2.42 2.088C9.196 9.369 10 8.999 10 8.999s.229-.409 0-1c-.841-.62-1.058-.59-1-3 .058-2.419 1.367-3 2.5-3s2.437.581 2.495 3c.059 2.41-.158 2.38-1 3-.229.59 0 1 0 1s3.005 1.366 3.005 4z"/></svg> + <span class="num text-emphasized"></span> + Fetching contributors + </a> +</include-fragment> </li> + + </ul> + </div> + + <details class="details-reset"> + <summary title="Click for language details" data-ga-click="Repository, language bar stats toggle, location:repo overview"> + <div class="d-flex repository-lang-stats-graph"> + <span class="language-color" aria-label="R 96.7%" style="width:96.7%; background-color:#198CE7;" itemprop="keywords">R</span> + <span class="language-color" aria-label="Shell 2.4%" style="width:2.4%; background-color:#89e051;" itemprop="keywords">Shell</span> + <span class="language-color" aria-label="Batchfile 0.9%" style="width:0.9%; background-color:#C1F12E;" itemprop="keywords">Batchfile</span> + </div> + </summary> + <div class="repository-lang-stats"> + <ol class="repository-lang-stats-numbers"> + <li> + <a href="/wanchanglin/massPix/search?l=r" data-ga-click="Repository, language stats search click, location:repo overview"> + <span class="color-block language-color" style="background-color:#198CE7;"></span> + <span class="lang">R</span> + <span class="percent">96.7%</span> + </a> + </li> + <li> + <a href="/wanchanglin/massPix/search?l=shell" data-ga-click="Repository, language stats search click, location:repo overview"> + <span class="color-block language-color" style="background-color:#89e051;"></span> + <span class="lang">Shell</span> + <span class="percent">2.4%</span> + </a> + </li> + <li> + <a href="/wanchanglin/massPix/search?l=batchfile" data-ga-click="Repository, language stats search click, location:repo overview"> + <span class="color-block language-color" style="background-color:#C1F12E;"></span> + <span class="lang">Batchfile</span> + <span class="percent">0.9%</span> + </a> + </li> + </ol> + </div> + </details> + + + + + + + <div class="file-navigation in-mid-page d-flex flex-items-start"> + +<details class="details-reset details-overlay select-menu branch-select-menu hx_rsm" id="branch-select-menu"> + <summary class="btn btn-sm select-menu-button css-truncate" + data-hotkey="w" + title="Switch branches or tags"> + <i>Branch:</i> + <span class="css-truncate-target" data-menu-button>master</span> + </summary> + + <details-menu class="select-menu-modal hx_rsm-modal position-absolute" style="z-index: 99;" src="/wanchanglin/massPix/ref-list/master?source_action=disambiguate&source_controller=files" preload> + <include-fragment class="select-menu-loading-overlay anim-pulse"> + <svg height="32" class="octicon octicon-octoface" viewBox="0 0 16 16" version="1.1" width="32" aria-hidden="true"><path fill-rule="evenodd" d="M14.7 5.34c.13-.32.55-1.59-.13-3.31 0 0-1.05-.33-3.44 1.3-1-.28-2.07-.32-3.13-.32s-2.13.04-3.13.32c-2.39-1.64-3.44-1.3-3.44-1.3-.68 1.72-.26 2.99-.13 3.31C.49 6.21 0 7.33 0 8.69 0 13.84 3.33 15 7.98 15S16 13.84 16 8.69c0-1.36-.49-2.48-1.3-3.35zM8 14.02c-3.3 0-5.98-.15-5.98-3.35 0-.76.38-1.48 1.02-2.07 1.07-.98 2.9-.46 4.96-.46 2.07 0 3.88-.52 4.96.46.65.59 1.02 1.3 1.02 2.07 0 3.19-2.68 3.35-5.98 3.35zM5.49 9.01c-.66 0-1.2.8-1.2 1.78s.54 1.79 1.2 1.79c.66 0 1.2-.8 1.2-1.79s-.54-1.78-1.2-1.78zm5.02 0c-.66 0-1.2.79-1.2 1.78s.54 1.79 1.2 1.79c.66 0 1.2-.8 1.2-1.79s-.53-1.78-1.2-1.78z"/></svg> + </include-fragment> + </details-menu> +</details> + + + <button type="button" class="btn btn-sm disabled tooltipped tooltipped-n new-pull-request-btn" aria-label="You must be signed in to create a pull request"> + New pull request + </button> + + <div class="breadcrumb flex-auto"> + + </div> + + <div class="BtnGroup"> + + <a class="btn btn-sm empty-icon float-right BtnGroup-item" data-hydro-click="{"event_type":"repository.click","payload":{"target":"FIND_FILE_BUTTON","repository_id":130720555,"client_id":null,"originating_request_id":"DF32:5384:1AA2DF:2A8C80:5D89D5CB","originating_url":"https://github.com/wanchanglin/massPix","referrer":null,"user_id":null}}" data-hydro-click-hmac="ba4ce1d5c183c78a5b34cb34e674842d226f69f5f049ec71c529ba0c1436ff29" data-ga-click="Repository, find file, location:repo overview" data-hotkey="t" data-pjax="true" href="/wanchanglin/massPix/find/master">Find File</a> + </div> + + + + + <details class="get-repo-select-menu js-get-repo-select-menu js-anon-get-repo-select-menu position-relative details-overlay details-reset"> + <summary class="btn btn-sm ml-2 btn-primary" data-hydro-click="{"event_type":"repository.click","payload":{"repository_id":130720555,"target":"CLONE_OR_DOWNLOAD_BUTTON","client_id":null,"originating_request_id":"DF32:5384:1AA2DF:2A8C80:5D89D5CB","originating_url":"https://github.com/wanchanglin/massPix","referrer":null,"user_id":null}}" data-hydro-click-hmac="feb178daf028d561781fdecb728675adb64eed2f972f057d3baf0c7428fc2459"> + Clone or download + <span class="dropdown-caret"></span> +</summary> <div class="position-relative"> + <div class="get-repo-modal dropdown-menu dropdown-menu-sw pb-0 js-toggler-container js-get-repo-modal"> + + <div class="get-repo-modal-options"> + <div class="clone-options https-clone-options"> + + <h4 class="mb-1"> + Clone with HTTPS + <a class="muted-link" href="https://help.github.com/articles/which-remote-url-should-i-use" target="_blank" title="Which remote URL should I use?"> + <svg class="octicon octicon-question" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M6 10h2v2H6v-2zm4-3.5C10 8.64 8 9 8 9H6c0-.55.45-1 1-1h.5c.28 0 .5-.22.5-.5v-1c0-.28-.22-.5-.5-.5h-1c-.28 0-.5.22-.5.5V7H4c0-1.5 1.5-3 3-3s3 1 3 2.5zM7 2.3c3.14 0 5.7 2.56 5.7 5.7s-2.56 5.7-5.7 5.7A5.71 5.71 0 0 1 1.3 8c0-3.14 2.56-5.7 5.7-5.7zM7 1C3.14 1 0 4.14 0 8s3.14 7 7 7 7-3.14 7-7-3.14-7-7-7z"/></svg> + </a> + </h4> + <p class="mb-2 get-repo-decription-text"> + Use Git or checkout with SVN using the web URL. + </p> + + <div class="input-group"> + <input type="text" class="form-control input-monospace input-sm" data-autoselect value="https://github.com/wanchanglin/massPix.git" aria-label="Clone this repository at https://github.com/wanchanglin/massPix.git" readonly> + <div class="input-group-button"> + <clipboard-copy value="https://github.com/wanchanglin/massPix.git" aria-label="Copy to clipboard" class="btn btn-sm" data-hydro-click="{"event_type":"clone_or_download.click","payload":{"feature_clicked":"COPY_URL","git_repository_type":"REPOSITORY","repository_id":130720555,"client_id":null,"originating_request_id":"DF32:5384:1AA2DF:2A8C80:5D89D5CB","originating_url":"https://github.com/wanchanglin/massPix","referrer":null,"user_id":null}}" data-hydro-click-hmac="eeb1e5fb5bf43e2f259105b0b223aa0596d3a1a1063ca7ee217b34cddac8b312"><svg class="octicon octicon-clippy" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M2 13h4v1H2v-1zm5-6H2v1h5V7zm2 3V8l-3 3 3 3v-2h5v-2H9zM4.5 9H2v1h2.5V9zM2 12h2.5v-1H2v1zm9 1h1v2c-.02.28-.11.52-.3.7-.19.18-.42.28-.7.3H1c-.55 0-1-.45-1-1V4c0-.55.45-1 1-1h3c0-1.11.89-2 2-2 1.11 0 2 .89 2 2h3c.55 0 1 .45 1 1v5h-1V6H1v9h10v-2zM2 5h8c0-.55-.45-1-1-1H8c-.55 0-1-.45-1-1s-.45-1-1-1-1 .45-1 1-.45 1-1 1H3c-.55 0-1 .45-1 1z"/></svg></clipboard-copy> + </div> +</div> + + </div> + + <div class="mt-2"> + +<a class="btn btn-outline get-repo-btn js-anon-download-zip-link " rel="nofollow" data-hydro-click="{"event_type":"clone_or_download.click","payload":{"feature_clicked":"DOWNLOAD_ZIP","git_repository_type":"REPOSITORY","repository_id":130720555,"client_id":null,"originating_request_id":"DF32:5384:1AA2DF:2A8C80:5D89D5CB","originating_url":"https://github.com/wanchanglin/massPix","referrer":null,"user_id":null}}" data-hydro-click-hmac="a664684912fc9b6edd29db06e430548810a0c88a903c1e92383c91031f0b5cf0" data-ga-click="Repository, download zip, location:repo overview" href="/wanchanglin/massPix/archive/master.zip">Download ZIP</a> + + </div> + </div> + + <div class="js-modal-downloading" hidden> + <div class="py-2 px-3"> + <h4 class="lh-condensed mb-3">Downloading<span class="animated-ellipsis-container"><span class="animated-ellipsis">...</span></span></h4> + <p class="text-gray"> + Want to be notified of new releases in + <span class="text-bold">wanchanglin/massPix</span>? + </p> + </div> + <div class="width-full d-flex"> + <a rel="nofollow" class="get-repo-btn btn btn-outline" style="width: 50%" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"download popover","repository_id":130720555,"auth_type":"LOG_IN","client_id":null,"originating_request_id":"DF32:5384:1AA2DF:2A8C80:5D89D5CB","originating_url":"https://github.com/wanchanglin/massPix","referrer":null,"user_id":null}}" data-hydro-click-hmac="6915548b44b0d7108a8bf9e7cb47da859e5648e7707a4064f856e68eb6c381a3" href="/login?return_to=https%3A%2F%2Fgithub.com%2Fwanchanglin%2FmassPix">Sign in</a> + <a rel="nofollow" class="get-repo-btn btn btn-primary" style="width: 50%" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"download popover","repository_id":130720555,"auth_type":"SIGN_UP","client_id":null,"originating_request_id":"DF32:5384:1AA2DF:2A8C80:5D89D5CB","originating_url":"https://github.com/wanchanglin/massPix","referrer":null,"user_id":null}}" data-hydro-click-hmac="0a82bcfc1b7171272fec225a6f8f34d65d0086bc596c8fca3b5bfac2f51f5e81" href="/join?return_to=%2Fwanchanglin%2FmassPix">Sign up</a> + </div> + </div> + + <div class="js-modal-download-mac py-2 px-3 d-none"> + <h4 class="lh-condensed mb-3">Launching GitHub Desktop<span class="animated-ellipsis-container"><span class="animated-ellipsis">...</span></span></h4> + <p class="text-gray">If nothing happens, <a href="https://desktop.github.com/">download GitHub Desktop</a> and try again.</p> + <p><button class="btn-link js-get-repo-modal-download-back">Go back</button></p> + </div> + + <div class="js-modal-download-windows py-2 px-3 d-none"> + <h4 class="lh-condensed mb-3">Launching GitHub Desktop<span class="animated-ellipsis-container"><span class="animated-ellipsis">...</span></span></h4> + <p class="text-gray">If nothing happens, <a href="https://desktop.github.com/">download GitHub Desktop</a> and try again.</p> + <p><button class="btn-link js-get-repo-modal-download-back">Go back</button></p> + </div> + + <div class="js-modal-download-xcode py-2 px-3 d-none"> + <h4 class="lh-condensed mb-3">Launching Xcode<span class="animated-ellipsis-container"><span class="animated-ellipsis">...</span></span></h4> + <p class="text-gray">If nothing happens, <a href="https://developer.apple.com/xcode/">download Xcode</a> and try again.</p> + <p><button class="btn-link js-get-repo-modal-download-back">Go back</button></p> + </div> + + <div class="js-modal-download-visual-studio py-2 px-3 d-none"> + <h4 class="lh-condensed mb-3">Launching Visual Studio<span class="animated-ellipsis-container"><span class="animated-ellipsis">...</span></span></h4> + <p class="text-gray">If nothing happens, <a href="https://visualstudio.github.com/">download the GitHub extension for Visual Studio</a> and try again.</p> + <p><button class="btn-link js-get-repo-modal-download-back">Go back</button></p> + </div> + + </div> + </div> +</details> + +</div> + + + 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class="TagsearchPopover-content js-tagsearch-popover-content overflow-auto" style="will-change:transform;"> + </div> + </div> +</div> + + <div class="Box-body"> + <article class="markdown-body entry-content p-5" itemprop="text"><h1><a id="user-content-masspix-for-galaxy" class="anchor" aria-hidden="true" href="#masspix-for-galaxy"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>massPix for Galaxy</h1> +<p>This is Galaxy tool for R package <code>massPix</code> which processes high resolution +mass spectrometry imaging data, performs multivariate statistics (PCA, +clustering) and lipid identification. For details, see +<a href="https://github.com/hallz/massPix">R package massPix</a> and <a href="https://link.springer.com/article/10.1007%2Fs11306-017-1252-5" rel="nofollow">Metabolomics +publication</a>.</p> +<h2><a id="user-content-installation" class="anchor" aria-hidden="true" href="#installation"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Installation</h2> +<ul> +<li> +<p>Install <a href="https://github.com/galaxyproject/galaxy">Galaxy</a> under Linux.</p> +</li> +<li> +<p>Install <a href="https://docs.conda.io/en/latest/miniconda.html" rel="nofollow">conda</a> under +Linux. <code>conda</code> is used to install <code>requirements</code> of this tool.</p> +</li> +<li> +<p>Use <code>git</code> to clone this tool</p> +<div class="highlight highlight-source-shell"><pre>git clone https://github.com/wanchanglin/massPix.git</pre></div> +</li> +<li> +<p>Add this tool's location into Galaxy' tool config file: +<code>~/Galaxy/config/tool_conf.xml</code>. For example, one simplified +<code>tool_conf.xml</code> looks like:</p> +<div class="highlight highlight-text-xml"><pre><?<span class="pl-ent">xml</span><span class="pl-e"> version</span>=<span class="pl-s"><span class="pl-pds">'</span>1.0<span class="pl-pds">'</span></span><span class="pl-e"> encoding</span>=<span class="pl-s"><span class="pl-pds">'</span>utf-8<span class="pl-pds">'</span></span>?> +<<span class="pl-ent">toolbox</span> <span class="pl-e">monitor</span>=<span class="pl-s"><span class="pl-pds">"</span>true<span class="pl-pds">"</span></span>> + + <<span class="pl-ent">section</span> <span class="pl-e">id</span>=<span class="pl-s"><span class="pl-pds">"</span>getext<span class="pl-pds">"</span></span> <span class="pl-e">name</span>=<span class="pl-s"><span class="pl-pds">"</span>Get Data<span class="pl-pds">"</span></span>> + <<span class="pl-ent">tool</span> <span class="pl-e">file</span>=<span class="pl-s"><span class="pl-pds">"</span>data_source/upload.xml<span class="pl-pds">"</span></span> /> + </<span class="pl-ent">section</span>> + + <<span class="pl-ent">section</span> <span class="pl-e">id</span>=<span class="pl-s"><span class="pl-pds">"</span>MyTools<span class="pl-pds">"</span></span> <span class="pl-e">name</span>=<span class="pl-s"><span class="pl-pds">"</span>My Tools<span class="pl-pds">"</span></span>> + <<span class="pl-ent">tool</span> <span class="pl-e">file</span>=<span class="pl-s"><span class="pl-pds">"</span>/path/to/massPix/massPix.xml<span class="pl-pds">"</span></span> /> + </<span class="pl-ent">section</span>> + +</<span class="pl-ent">toolbox</span>></pre></div> +</li> +<li> +<p>The Galaxy tool uses <a href="https://cran.r-project.org/" rel="nofollow">R</a> packages <code>optparse</code>, +<code>WriteXLS</code>, <code>calibrate</code> and <code>rJava</code>. This tool embeds a modified +<code>massPix</code> package for Galaxy only.</p> +</li> +<li> +<p>To test the tool, use data inside <code>test-data</code> or download test data (.ibd +and .imzML files) from the +<a href="https://www.ebi.ac.uk/metabolights/" rel="nofollow">MetaboLights</a> repository accession +number <a href="https://www.ebi.ac.uk/metabolights/MTBLS487" rel="nofollow">MTBLS487</a>.</p> +</li> +</ul> +<h2><a id="user-content-authors-contributors--contacts" class="anchor" aria-hidden="true" href="#authors-contributors--contacts"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Authors, contributors & contacts</h2> +<ul> +<li>Wanchang Lin (<a href="mailto:wl361@cam.ac.uk">wl361@cam.ac.uk</a>), University of Cambridge</li> +<li>Zoe Hall (<a href="mailto:zlh22@cam.ac.uk">zlh22@cam.ac.uk</a>), University of Cambridge</li> +<li>Julian L Griffin (<a href="mailto:jlg40@cam.ac.uk">jlg40@cam.ac.uk</a>), University of Cambridge</li> +</ul> +</article> + </div> + </div> + + + + </div> +</div> + + </main> + </div> + + + </div> + + +<div class="footer container-lg width-full px-3" role="contentinfo"> + <div class="position-relative d-flex flex-justify-between pt-6 pb-2 mt-6 f6 text-gray border-top border-gray-light "> + <ul class="list-style-none d-flex flex-wrap "> + <li class="mr-3">© 2019 <span title="0.20557s from unicorn-b574c664f-phstc">GitHub</span>, Inc.</li> + <li class="mr-3"><a data-ga-click="Footer, go to terms, text:terms" href="https://github.com/site/terms">Terms</a></li> + <li class="mr-3"><a 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