view masspix/macros.xml @ 2:b2f4fc0fc97d draft default tip

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author metaboflow_cam
date Tue, 22 Oct 2019 05:44:45 -0400
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<macros>
  <xml name="requirements">
    <requirements>
      <requirement type="package" version="1.6.4">r-optparse</requirement>
      <requirement type="package" version="5.0.0">r-writexls</requirement>
      <requirement type="package" version="0.9_11">r-rjava</requirement>
      <requirement type="package" version="1.7.5">r-calibrate</requirement>
      <requirement type="package" version="8.0.112">java-jdk</requirement>
    </requirements>
  </xml>
  <xml name="stdio">
    <stdio>
      <regex match="Execution halted"
            source="both"
            level="fatal"
            description="Execution halted." />
      <regex match="Error in"
            source="both"
            level="fatal"
            description="An undefined error occurred, please check your input
                          carefully and contact your administrator." />
      <regex match="Fatal error"
            source="both"
            level="fatal"
            description="An undefined error occurred, please check your input
                          carefully and contact your administrator." />
    </stdio>
  </xml>
  <xml name="infile_imzml">
    <param name="imzML_file" value="" ftype="imzml">
      <composite_data value="cut_masspix.imzML"/>
      <composite_data value="cut_masspix.ibd"/>
    </param>
  </xml>

</macros>