Mercurial > repos > metexplore > met4j
comparison tools/met4j.yml @ 9:0976a6257300 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 05db35f63cadb9d56dafff594a3507c59cd85273
| author | metexplore |
|---|---|
| date | Fri, 31 Jan 2025 18:28:53 +0000 |
| parents | 1274e2a62479 |
| children |
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| 8:1274e2a62479 | 9:0976a6257300 |
|---|---|
| 1 --- | 1 --- |
| 2 install_repository_dependencies: true | 2 install_repository_dependencies: true |
| 3 install_resolver_dependencies: true | 3 install_resolver_dependencies: true |
| 4 install_tool_dependencies: false | 4 install_tool_dependencies: false |
| 5 tools: | 5 tools: |
| 6 - name: DecomposeSBML | 6 - name: ExtractAnnotations |
| 7 owner: metexplore | 7 owner: metexplore |
| 8 tool_panel_section_id: met4j_attributes | 8 tool_panel_section_id: met4j_attributes |
| 9 - name: ExtractPathways | 9 - name: ExtractPathways |
| 10 owner: metexplore | 10 owner: metexplore |
| 11 tool_panel_section_id: met4j_attributes | 11 tool_panel_section_id: met4j_attributes |
| 12 - name: ExtractSbmlAnnot | 12 - name: GetEntities |
| 13 owner: metexplore | 13 owner: metexplore |
| 14 tool_panel_section_id: met4j_attributes | 14 tool_panel_section_id: met4j_attributes |
| 15 - name: GetGenesFromReactions | 15 - name: GetGenesFromReactions |
| 16 owner: metexplore | 16 owner: metexplore |
| 17 tool_panel_section_id: met4j_attributes | 17 tool_panel_section_id: met4j_attributes |
| 18 - name: GetMetaboliteAttributes | |
| 19 owner: metexplore | |
| 20 tool_panel_section_id: met4j_attributes | |
| 18 - name: GetReactantsFromReactions | 21 - name: GetReactantsFromReactions |
| 19 owner: metexplore | 22 owner: metexplore |
| 20 tool_panel_section_id: met4j_attributes | 23 tool_panel_section_id: met4j_attributes |
| 21 - name: SbmlSetChargesFromFile | 24 - name: SetCharges |
| 22 owner: metexplore | 25 owner: metexplore |
| 23 tool_panel_section_id: met4j_attributes | 26 tool_panel_section_id: met4j_attributes |
| 24 - name: SbmlSetEcsFromFile | 27 - name: SetChemicalFormulas |
| 25 owner: metexplore | 28 owner: metexplore |
| 26 tool_panel_section_id: met4j_attributes | 29 tool_panel_section_id: met4j_attributes |
| 27 - name: SbmlSetFormulasFromFile | 30 - name: SetEcNumbers |
| 28 owner: metexplore | 31 owner: metexplore |
| 29 tool_panel_section_id: met4j_attributes | 32 tool_panel_section_id: met4j_attributes |
| 30 - name: SbmlSetGprsFromFile | 33 - name: SetGprs |
| 31 owner: metexplore | 34 owner: metexplore |
| 32 tool_panel_section_id: met4j_attributes | 35 tool_panel_section_id: met4j_attributes |
| 33 - name: SbmlSetIdsFromFile | 36 - name: SetIds |
| 34 owner: metexplore | 37 owner: metexplore |
| 35 tool_panel_section_id: met4j_attributes | 38 tool_panel_section_id: met4j_attributes |
| 36 - name: SbmlSetNamesFromFile | 39 - name: SetNames |
| 37 owner: metexplore | 40 owner: metexplore |
| 38 tool_panel_section_id: met4j_attributes | 41 tool_panel_section_id: met4j_attributes |
| 39 - name: SbmlSetPathwaysFromFile | 42 - name: SetPathways |
| 40 owner: metexplore | 43 owner: metexplore |
| 41 tool_panel_section_id: met4j_attributes | 44 tool_panel_section_id: met4j_attributes |
| 42 - name: SbmlSetRefsFromFile | 45 - name: SetReferences |
| 43 owner: metexplore | 46 owner: metexplore |
| 44 tool_panel_section_id: met4j_attributes | 47 tool_panel_section_id: met4j_attributes |
| 45 - name: SbmlToMetaboliteTable | 48 - name: GetBiggModelProteome |
| 46 owner: metexplore | |
| 47 tool_panel_section_id: met4j_attributes | |
| 48 - name: GetModelProteome | |
| 49 owner: metexplore | 49 owner: metexplore |
| 50 tool_panel_section_id: met4j_bigg | 50 tool_panel_section_id: met4j_bigg |
| 51 - name: FbcToNotes | 51 - name: FbcToNotes |
| 52 owner: metexplore | 52 owner: metexplore |
| 53 tool_panel_section_id: met4j_convert | 53 tool_panel_section_id: met4j_convert |
| 54 - name: Kegg2Sbml | 54 - name: Kegg2Sbml |
| 55 owner: metexplore | 55 owner: metexplore |
| 56 tool_panel_section_id: met4j_convert | 56 tool_panel_section_id: met4j_convert |
| 57 - name: SBMLwizard | 57 - name: Sbml2CarbonSkeletonNet |
| 58 owner: metexplore | |
| 59 tool_panel_section_id: met4j_convert | |
| 60 - name: Sbml2CompoundGraph | |
| 58 owner: metexplore | 61 owner: metexplore |
| 59 tool_panel_section_id: met4j_convert | 62 tool_panel_section_id: met4j_convert |
| 60 - name: Sbml2Graph | 63 - name: Sbml2Graph |
| 61 owner: metexplore | 64 owner: metexplore |
| 62 tool_panel_section_id: met4j_convert | 65 tool_panel_section_id: met4j_convert |
| 66 - name: Sbml2PathwayNet | |
| 67 owner: metexplore | |
| 68 tool_panel_section_id: met4j_convert | |
| 63 - name: Sbml2Tab | 69 - name: Sbml2Tab |
| 70 owner: metexplore | |
| 71 tool_panel_section_id: met4j_convert | |
| 72 - name: SbmlWizard | |
| 64 owner: metexplore | 73 owner: metexplore |
| 65 tool_panel_section_id: met4j_convert | 74 tool_panel_section_id: met4j_convert |
| 66 - name: Tab2Sbml | 75 - name: Tab2Sbml |
| 67 owner: metexplore | 76 owner: metexplore |
| 68 tool_panel_section_id: met4j_convert | 77 tool_panel_section_id: met4j_convert |
| 73 owner: metexplore | 82 owner: metexplore |
| 74 tool_panel_section_id: met4j_mapping | 83 tool_panel_section_id: met4j_mapping |
| 75 - name: BipartiteDistanceMatrix | 84 - name: BipartiteDistanceMatrix |
| 76 owner: metexplore | 85 owner: metexplore |
| 77 tool_panel_section_id: met4j_networkanalysis | 86 tool_panel_section_id: met4j_networkanalysis |
| 78 - name: CarbonSkeletonNet | |
| 79 owner: metexplore | |
| 80 tool_panel_section_id: met4j_networkanalysis | |
| 81 - name: ChemSimilarityWeighting | 87 - name: ChemSimilarityWeighting |
| 82 owner: metexplore | 88 owner: metexplore |
| 83 tool_panel_section_id: met4j_networkanalysis | 89 tool_panel_section_id: met4j_networkanalysis |
| 84 - name: ChokePoint | 90 - name: ChokePoint |
| 85 owner: metexplore | |
| 86 tool_panel_section_id: met4j_networkanalysis | |
| 87 - name: CompoundNet | |
| 88 owner: metexplore | 91 owner: metexplore |
| 89 tool_panel_section_id: met4j_networkanalysis | 92 tool_panel_section_id: met4j_networkanalysis |
| 90 - name: DegreeWeighting | 93 - name: DegreeWeighting |
| 91 owner: metexplore | 94 owner: metexplore |
| 92 tool_panel_section_id: met4j_networkanalysis | 95 tool_panel_section_id: met4j_networkanalysis |
| 109 owner: metexplore | 112 owner: metexplore |
| 110 tool_panel_section_id: met4j_networkanalysis | 113 tool_panel_section_id: met4j_networkanalysis |
| 111 - name: NetworkSummary | 114 - name: NetworkSummary |
| 112 owner: metexplore | 115 owner: metexplore |
| 113 tool_panel_section_id: met4j_networkanalysis | 116 tool_panel_section_id: met4j_networkanalysis |
| 114 - name: PathwayNet | |
| 115 owner: metexplore | |
| 116 tool_panel_section_id: met4j_networkanalysis | |
| 117 - name: PrecursorNetwork | 117 - name: PrecursorNetwork |
| 118 owner: metexplore | 118 owner: metexplore |
| 119 tool_panel_section_id: met4j_networkanalysis | 119 tool_panel_section_id: met4j_networkanalysis |
| 120 - name: ReactionDistanceMatrix | 120 - name: ReactionDistanceMatrix |
| 121 owner: metexplore | 121 owner: metexplore |
| 130 owner: metexplore | 130 owner: metexplore |
| 131 tool_panel_section_id: met4j_networkanalysis | 131 tool_panel_section_id: met4j_networkanalysis |
| 132 - name: TopologicalPathwayAnalysis | 132 - name: TopologicalPathwayAnalysis |
| 133 owner: metexplore | 133 owner: metexplore |
| 134 tool_panel_section_id: met4j_networkanalysis | 134 tool_panel_section_id: met4j_networkanalysis |
| 135 - name: CreateMetaNetwork | |
| 136 owner: metexplore | |
| 137 tool_panel_section_id: met4j_reconstruction | |
| 135 - name: SbmlCheckBalance | 138 - name: SbmlCheckBalance |
| 136 owner: metexplore | 139 owner: metexplore |
| 137 tool_panel_section_id: met4j_reconstruction | 140 tool_panel_section_id: met4j_reconstruction |