Mercurial > repos > metexplore > met4j
comparison build/tools/NameMatcher/NameMatcher.xml @ 7:1436e9cde9c9 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 1d31a48bf8328b7a3ad9910971d24b9f453459c5
author | metexplore |
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date | Tue, 04 Jul 2023 10:21:26 +0000 |
parents | 7a6f2380fc1d |
children | 1274e2a62479 |
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6:7a6f2380fc1d | 7:1436e9cde9c9 |
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1 <?xml version="1.0" encoding="UTF-8"?> | 1 <?xml version="1.0" encoding="UTF-8"?> |
2 <tool id="met4j_NameMatcher" name="NameMatcher" version="1.3.0"> | 2 <tool id="met4j_NameMatcher" name="NameMatcher" version="1.4.0"> |
3 <description>This tool runs edit-distance based fuzzy matching to perform near-similar name matching between a metabolic model and a list of chemical names in a dataset. A harmonization processing is performed on chemical names with substitutions of common patterns among synonyms, in order to create aliases on which classical fuzzy matching can be run efficiently.</description> | 3 <description>This tool runs edit-distance based fuzzy matching to perform near-similar name matching between a metabolic model and a list of chemical names in a dataset. A harmonization processing is performed on chemical names with substitutions of common patterns among synonyms, in order to create aliases on which classical fuzzy matching can be run efficiently.</description> |
4 <xrefs> | 4 <xrefs> |
5 <xref type="bio.tools">met4j</xref> | 5 <xref type="bio.tools">met4j</xref> |
6 </xrefs> | 6 </xrefs> |
7 <requirements> | 7 <requirements> |
8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.3.0</container> | 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.4.0</container> |
9 </requirements> | 9 </requirements> |
10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh mapping.NameMatcher#if str($n): | 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh mapping.NameMatcher#if str($n): |
11 -nMatch "$n" | 11 -nMatch "$n" |
12 #end if | 12 #end if |
13 #if str($nSkip): | 13 #if str($nSkip): |