Mercurial > repos > metexplore > met4j
comparison tools/reconstruction/SbmlCheckBalance/SbmlCheckBalance.xml @ 5:35c9abcd8934 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 8577c4cd3ad279c5e97f48f822e041c6b0d90598
| author | metexplore |
|---|---|
| date | Thu, 12 Jan 2023 13:45:13 +0000 |
| parents | |
| children | 7a6f2380fc1d |
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| 4:ae4c301919c4 | 5:35c9abcd8934 |
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| 1 <?xml version="1.0" encoding="UTF-8"?> | |
| 2 <tool id="met4j_SbmlCheckBalance" name="SbmlCheckBalance" version="1.2.1"> | |
| 3 <description>Check balance of all the reactions in a SBML.</description> | |
| 4 <xrefs> | |
| 5 <xref type="bio.tools">met4j</xref> | |
| 6 </xrefs> | |
| 7 <requirements> | |
| 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.2.1</container> | |
| 9 </requirements> | |
| 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh reconstruction.SbmlCheckBalance -sbml "$sbml" | |
| 11 -out "$out" | |
| 12 ]]></command> | |
| 13 <inputs> | |
| 14 <param argument="-sbml" format="sbml" label="Original sbml file" name="sbml" optional="false" type="data" value=""/> | |
| 15 </inputs> | |
| 16 <outputs> | |
| 17 <data format="tsv" name="out"/> | |
| 18 </outputs> | |
| 19 <tests/> | |
| 20 <help><![CDATA[Check balance of all the reactions in a SBML. | |
| 21 A reaction is balanced if all its reactants have a chemical formula with a good syntax and if the quantity of each atom is the same in both sides of the reaction. | |
| 22 For each reaction, indicates if the reaction is balanced, the list of the atoms and the sum of their quantity, and the list of the metabolites that don't have a correct chemical formula.]]></help> | |
| 23 <citations/> | |
| 24 </tool> |