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comparison build/tools/FbcToNotes/FbcToNotes.xml @ 6:7a6f2380fc1d draft

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planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy
author metexplore
date Wed, 17 May 2023 13:26:37 +0000
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children 1436e9cde9c9
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5:35c9abcd8934 6:7a6f2380fc1d
1 <?xml version="1.0" encoding="UTF-8"?>
2 <tool id="met4j_FbcToNotes" name="FbcToNotes" version="1.3.0">
3 <description>Convert FBC package annotations to sbml notes</description>
4 <xrefs>
5 <xref type="bio.tools">met4j</xref>
6 </xrefs>
7 <requirements>
8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.3.0</container>
9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.FbcToNotes -i "$inputPath"
11 -o "$outputPath"
12 ]]></command>
13 <inputs>
14 <param argument="-i" format="sbml" label="input file" name="inputPath" optional="false" type="data" value=""/>
15 </inputs>
16 <outputs>
17 <data format="sbml" name="outputPath"/>
18 </outputs>
19 <tests>
20 <test>
21 <param name="inputPath" value="ECOL.xml"/>
22 <output ftype="sbml" name="outputPath">
23 <assert_contents>
24 <is_valid_xml/>
25 <has_line_matching expression=".*GENE_ASSOCIATION: b2312.*" n="1"/>
26 </assert_contents>
27 </output>
28 </test>
29 </tests>
30 <help><![CDATA[Convert FBC package annotations to sbml notes]]></help>
31 <citations/>
32 </tool>