Mercurial > repos > metexplore > met4j
comparison tools/attributes/SbmlSetGprsFromFile/SbmlSetGprsFromFile.xml @ 6:7a6f2380fc1d draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy
author | metexplore |
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date | Wed, 17 May 2023 13:26:37 +0000 |
parents | 35c9abcd8934 |
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5:35c9abcd8934 | 6:7a6f2380fc1d |
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1 <?xml version="1.0" encoding="UTF-8"?> | 1 <?xml version="1.0" encoding="UTF-8"?> |
2 <tool id="met4j_SbmlSetGprsFromFile" name="SbmlSetGprsFromFile" version="1.2.1"> | 2 <tool id="met4j_SbmlSetGprsFromFile" name="SbmlSetGprsFromFile" version="MET4J_VERSION_TEST"> |
3 <description>Create a new SBML file from an original sbml file and a tabulated file containing reaction ids and Gene association written in a cobra way</description> | 3 <description>Create a new SBML file from an original sbml file and a tabulated file containing reaction ids and Gene association written in a cobra way</description> |
4 <xrefs> | 4 <xrefs> |
5 <xref type="bio.tools">met4j</xref> | 5 <xref type="bio.tools">met4j</xref> |
6 </xrefs> | 6 </xrefs> |
7 <requirements> | 7 <requirements> |
8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.2.1</container> | 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:MET4J_VERSION_TEST</container> |
9 </requirements> | 9 </requirements> |
10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlSetGprsFromFile#if str($colgpr) != 'nan': | 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlSetGprsFromFile#if str($colgpr) != 'nan': |
11 -cgpr "$colgpr" | 11 -cgpr "$colgpr" |
12 #end if | 12 #end if |
13 #if str($colid) != 'nan': | 13 #if str($colid) != 'nan': |