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comparison tools/attributes/ExtractPathways/ExtractPathways.xml @ 1:9b162ee6ff8e draft

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planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
author metexplore
date Mon, 27 Jun 2022 13:41:08 +0000
parents dcd16521b969
children e69a78624877
comparison
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0:dcd16521b969 1:9b162ee6ff8e
1 <?xml version="1.0" encoding="UTF-8"?> 1 <?xml version="1.0" encoding="UTF-8"?>
2 <tool id="met4j_ExtractPathways" name="ExtractPathways" version="0.11.0"> 2 <tool id="met4j_ExtractPathways" name="ExtractPathways" version="0.12.0">
3 <description>Extract pathway(s) from GSMN</description> 3 <description>Extract pathway(s) from GSMN</description>
4 <xrefs> 4 <xrefs>
5 <xref type="bio.tools">met4j</xref> 5 <xref type="bio.tools">met4j</xref>
6 </xrefs> 6 </xrefs>
7 <requirements> 7 <requirements>
8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.11.0</container> 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.12.0</container>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.ExtractPathways -i "$inputPath" 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.ExtractPathways -i "$inputPath"
11 -p "$pathwayId" 11 -p "$pathwayId"
12 -o "$outputPath" 12 -o "$outputPath"
13 ]]></command> 13 ]]></command>
34 </assert_contents> 34 </assert_contents>
35 </output> 35 </output>
36 </test> 36 </test>
37 </tests> 37 </tests>
38 <help><![CDATA["Extract pathway(s) from GSMN: From a SBML file, Create a sub-network SBML file including only a selection of pathways]]></help> 38 <help><![CDATA["Extract pathway(s) from GSMN: From a SBML file, Create a sub-network SBML file including only a selection of pathways]]></help>
39 <citations/>
39 </tool> 40 </tool>