Mercurial > repos > metexplore > met4j
comparison tools/attributes/ExtractSbmlAnnot/ExtractSbmlAnnot.xml @ 1:9b162ee6ff8e draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
| author | metexplore |
|---|---|
| date | Mon, 27 Jun 2022 13:41:08 +0000 |
| parents | dcd16521b969 |
| children | e69a78624877 |
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| 0:dcd16521b969 | 1:9b162ee6ff8e |
|---|---|
| 1 <?xml version="1.0" encoding="UTF-8"?> | 1 <?xml version="1.0" encoding="UTF-8"?> |
| 2 <tool id="met4j_ExtractSbmlAnnot" name="ExtractSbmlAnnot" version="0.11.0"> | 2 <tool id="met4j_ExtractSbmlAnnot" name="ExtractSbmlAnnot" version="0.12.0"> |
| 3 <description>Extract databases' references from SBML annotations or notes.</description> | 3 <description>Extract databases' references from SBML annotations or notes.</description> |
| 4 <xrefs> | 4 <xrefs> |
| 5 <xref type="bio.tools">met4j</xref> | 5 <xref type="bio.tools">met4j</xref> |
| 6 </xrefs> | 6 </xrefs> |
| 7 <requirements> | 7 <requirements> |
| 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.11.0</container> | 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.12.0</container> |
| 9 </requirements> | 9 </requirements> |
| 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.ExtractSbmlAnnot -i "$inputPath" | 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.ExtractSbmlAnnot -i "$inputPath" |
| 11 -export "$export" | 11 -export "$export" |
| 12 -db "$db" | 12 -db "$db" |
| 13 $uniq | 13 $uniq |
| 69 </assert_contents> | 69 </assert_contents> |
| 70 </output> | 70 </output> |
| 71 </test> | 71 </test> |
| 72 </tests> | 72 </tests> |
| 73 <help><![CDATA[Extract databases' references from SBML annotations or notes. The references are exported as a tabulated file with one column with the SBML compound, reaction or gene identifiers, and one column with the corresponding database identifier.The name of the targeted database need to be provided under the same form than the one used in the notes field or the identifiers.org uri]]></help> | 73 <help><![CDATA[Extract databases' references from SBML annotations or notes. The references are exported as a tabulated file with one column with the SBML compound, reaction or gene identifiers, and one column with the corresponding database identifier.The name of the targeted database need to be provided under the same form than the one used in the notes field or the identifiers.org uri]]></help> |
| 74 <citations/> | |
| 74 </tool> | 75 </tool> |