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comparison tools/attributes/SbmlSetNamesFromFile/SbmlSetNamesFromFile.xml @ 1:9b162ee6ff8e draft

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planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
author metexplore
date Mon, 27 Jun 2022 13:41:08 +0000
parents dcd16521b969
children e69a78624877
comparison
equal deleted inserted replaced
0:dcd16521b969 1:9b162ee6ff8e
1 <?xml version="1.0" encoding="UTF-8"?> 1 <?xml version="1.0" encoding="UTF-8"?>
2 <tool id="met4j_SbmlSetNamesFromFile" name="SbmlSetNamesFromFile" version="0.11.0"> 2 <tool id="met4j_SbmlSetNamesFromFile" name="SbmlSetNamesFromFile" version="0.12.0">
3 <description>Set names to network objects from a tabulated file containing the object ids and the names</description> 3 <description>Set names to network objects from a tabulated file containing the object ids and the names</description>
4 <xrefs> 4 <xrefs>
5 <xref type="bio.tools">met4j</xref> 5 <xref type="bio.tools">met4j</xref>
6 </xrefs> 6 </xrefs>
7 <requirements> 7 <requirements>
8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.11.0</container> 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.12.0</container>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlSetNamesFromFile#if str($colname) != 'nan': 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlSetNamesFromFile#if str($colname) != 'nan':
11 -cname "$colname" 11 -cname "$colname"
12 #end if 12 #end if
13 #if str($colid): 13 #if str($colid):
111 </tests> 111 </tests>
112 <help><![CDATA[Set names to network objects from a tabulated file containing the object ids and the names 112 <help><![CDATA[Set names to network objects from a tabulated file containing the object ids and the names
113 The ids must correspond between the tabulated file and the SBML file. 113 The ids must correspond between the tabulated file and the SBML file.
114 If prefix or suffix is different in the SBML file, use the -p or the -s options. 114 If prefix or suffix is different in the SBML file, use the -p or the -s options.
115 ]]></help> 115 ]]></help>
116 <citations/>
116 </tool> 117 </tool>