Mercurial > repos > metexplore > met4j
comparison tools/convert/Sbml2Graph/Sbml2Graph.xml @ 1:9b162ee6ff8e draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
author | metexplore |
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date | Mon, 27 Jun 2022 13:41:08 +0000 |
parents | dcd16521b969 |
children | e69a78624877 |
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0:dcd16521b969 | 1:9b162ee6ff8e |
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1 <?xml version="1.0" encoding="UTF-8"?> | 1 <?xml version="1.0" encoding="UTF-8"?> |
2 <tool id="met4j_Sbml2Graph" name="Sbml2Graph" version="0.11.0"> | 2 <tool id="met4j_Sbml2Graph" name="Sbml2Graph" version="0.12.0"> |
3 <description>Create a graph representation of a SBML file content, and export it in graph file format.</description> | 3 <description>Create a graph representation of a SBML file content, and export it in graph file format.</description> |
4 <xrefs> | 4 <xrefs> |
5 <xref type="bio.tools">met4j</xref> | 5 <xref type="bio.tools">met4j</xref> |
6 </xrefs> | 6 </xrefs> |
7 <requirements> | 7 <requirements> |
8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.11.0</container> | 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.12.0</container> |
9 </requirements> | 9 </requirements> |
10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Sbml2Graph -i "$inputPath" | 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Sbml2Graph -i "$inputPath" |
11 $bipartite | 11 $bipartite |
12 $compound | 12 $compound |
13 $reaction | 13 $reaction |
56 </output> | 56 </output> |
57 </test> | 57 </test> |
58 </tests> | 58 </tests> |
59 <help><![CDATA[Create a graph representation of a SBML file content, and export it in graph file format. | 59 <help><![CDATA[Create a graph representation of a SBML file content, and export it in graph file format. |
60 The graph can be either a compound graph or a bipartite graph, and can be exported in gml or tabulated file format.]]></help> | 60 The graph can be either a compound graph or a bipartite graph, and can be exported in gml or tabulated file format.]]></help> |
61 <citations/> | |
61 </tool> | 62 </tool> |