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comparison tools/convert/Sbml2Graph/Sbml2Graph.xml @ 1:9b162ee6ff8e draft

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planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
author metexplore
date Mon, 27 Jun 2022 13:41:08 +0000
parents dcd16521b969
children e69a78624877
comparison
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0:dcd16521b969 1:9b162ee6ff8e
1 <?xml version="1.0" encoding="UTF-8"?> 1 <?xml version="1.0" encoding="UTF-8"?>
2 <tool id="met4j_Sbml2Graph" name="Sbml2Graph" version="0.11.0"> 2 <tool id="met4j_Sbml2Graph" name="Sbml2Graph" version="0.12.0">
3 <description>Create a graph representation of a SBML file content, and export it in graph file format.</description> 3 <description>Create a graph representation of a SBML file content, and export it in graph file format.</description>
4 <xrefs> 4 <xrefs>
5 <xref type="bio.tools">met4j</xref> 5 <xref type="bio.tools">met4j</xref>
6 </xrefs> 6 </xrefs>
7 <requirements> 7 <requirements>
8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.11.0</container> 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.12.0</container>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Sbml2Graph -i "$inputPath" 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Sbml2Graph -i "$inputPath"
11 $bipartite 11 $bipartite
12 $compound 12 $compound
13 $reaction 13 $reaction
56 </output> 56 </output>
57 </test> 57 </test>
58 </tests> 58 </tests>
59 <help><![CDATA[Create a graph representation of a SBML file content, and export it in graph file format. 59 <help><![CDATA[Create a graph representation of a SBML file content, and export it in graph file format.
60 The graph can be either a compound graph or a bipartite graph, and can be exported in gml or tabulated file format.]]></help> 60 The graph can be either a compound graph or a bipartite graph, and can be exported in gml or tabulated file format.]]></help>
61 <citations/>
61 </tool> 62 </tool>