Mercurial > repos > metexplore > met4j
comparison tools/networkAnalysis/NetworkSummary/NetworkSummary.xml @ 1:9b162ee6ff8e draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
author | metexplore |
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date | Mon, 27 Jun 2022 13:41:08 +0000 |
parents | dcd16521b969 |
children | e69a78624877 |
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0:dcd16521b969 | 1:9b162ee6ff8e |
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1 <?xml version="1.0" encoding="UTF-8"?> | 1 <?xml version="1.0" encoding="UTF-8"?> |
2 <tool id="met4j_NetworkSummary" name="NetworkSummary" version="0.11.0"> | 2 <tool id="met4j_NetworkSummary" name="NetworkSummary" version="0.12.0"> |
3 <description>Create a report summarizing several graph measures characterising the structure of the network.</description> | 3 <description>Create a report summarizing several graph measures characterising the structure of the network.</description> |
4 <xrefs> | 4 <xrefs> |
5 <xref type="bio.tools">met4j</xref> | 5 <xref type="bio.tools">met4j</xref> |
6 </xrefs> | 6 </xrefs> |
7 <requirements> | 7 <requirements> |
8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.11.0</container> | 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.12.0</container> |
9 </requirements> | 9 </requirements> |
10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.NetworkSummary -i "$inputPath" | 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.NetworkSummary -i "$inputPath" |
11 #if str($sideCompoundFile) != 'None': | 11 #if str($sideCompoundFile) != 'None': |
12 -s "$sideCompoundFile" | 12 -s "$sideCompoundFile" |
13 #end if | 13 #end if |
30 <output name="outputPath"> | 30 <output name="outputPath"> |
31 </output> | 31 </output> |
32 </test> | 32 </test> |
33 </tests> | 33 </tests> |
34 <help><![CDATA[Use a metabolic network in SBML file and an optional list of side compounds, and produce a report summarizing several graph measures characterising the structure of the network.This includes (non-exhaustive list): size and order, connectivity, density, degree distribution, shortest paths length, top centrality nodes...]]></help> | 34 <help><![CDATA[Use a metabolic network in SBML file and an optional list of side compounds, and produce a report summarizing several graph measures characterising the structure of the network.This includes (non-exhaustive list): size and order, connectivity, density, degree distribution, shortest paths length, top centrality nodes...]]></help> |
35 <citations/> | |
35 </tool> | 36 </tool> |