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comparison tools/networkAnalysis/ExtractSubReactionNetwork/ExtractSubReactionNetwork.xml @ 4:ae4c301919c4 draft

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planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 2af2c8a0ca9665e1117bb7810bffc105ed39c4f5
author metexplore
date Thu, 17 Nov 2022 07:57:52 +0000
parents 6bd9aad9626d
children 35c9abcd8934
comparison
equal deleted inserted replaced
3:6bd9aad9626d 4:ae4c301919c4
1 <?xml version="1.0" encoding="UTF-8"?> 1 <?xml version="1.0" encoding="UTF-8"?>
2 <tool id="met4j_ExtractSubReactionNetwork" name="ExtractSubReactionNetwork" version="1.1.0"> 2 <tool id="met4j_ExtractSubReactionNetwork" name="ExtractSubReactionNetwork" version="1.2.0">
3 <description>Create a subnetwork from a GSMN in SBML format, and two files containing lists of reactions of interests ids, one per row, plus one file of the same format containing side compounds ids.</description> 3 <description>Create a subnetwork from a GSMN in SBML format, and two files containing lists of reactions of interests ids, one per row, plus one file of the same format containing side compounds ids.</description>
4 <xrefs> 4 <xrefs>
5 <xref type="bio.tools">met4j</xref> 5 <xref type="bio.tools">met4j</xref>
6 </xrefs> 6 </xrefs>
7 <requirements> 7 <requirements>
8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container> 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.2.0</container>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.ExtractSubReactionNetwork -i "$inputPath" 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.ExtractSubReactionNetwork -i "$inputPath"
11 -s "$sourcePath" 11 -s "$sourcePath"
12 $undirected 12 $undirected
13 $asTable 13 $asTable