Mercurial > repos > metexplore > met4j
comparison Dockerfile @ 0:dcd16521b969 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 5dab0a2d83a1fdd7a1878a50ba0f24e752505393
| author | metexplore |
|---|---|
| date | Fri, 10 Jun 2022 10:31:34 +0000 |
| parents | |
| children | 7a6f2380fc1d |
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| -1:000000000000 | 0:dcd16521b969 |
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| 1 | |
| 2 FROM python:3.8-buster | |
| 3 | |
| 4 # set author | |
| 5 MAINTAINER Ludovic Cottret <ludovic.cottret@inrae.fr> | |
| 6 | |
| 7 # set encoding | |
| 8 ENV LC_ALL en_US.UTF-8 | |
| 9 ENV LANG en_US.UTF-8 | |
| 10 | |
| 11 ENV PLANEMO_VENV_LOCATION /planemo-venv | |
| 12 ENV CONDA /tmp/conda | |
| 13 | |
| 14 RUN \ | |
| 15 apt-get update \ | |
| 16 && apt-get install -y --no-install-recommends \ | |
| 17 ed \ | |
| 18 less \ | |
| 19 locales \ | |
| 20 vim-tiny \ | |
| 21 wget \ | |
| 22 ca-certificates \ | |
| 23 fonts-texgyre \ | |
| 24 build-essential \ | |
| 25 libseccomp-dev \ | |
| 26 pkg-config \ | |
| 27 squashfs-tools \ | |
| 28 cryptsetup \ | |
| 29 && echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen \ | |
| 30 && locale-gen en_US.utf8 \ | |
| 31 && /usr/sbin/update-locale LANG=en_US.UTF-8 \ | |
| 32 && echo "deb http://http.debian.net/debian buster main" > /etc/apt/sources.list.d/debian-unstable.list \ | |
| 33 && echo 'APT::Default-Release "buster";' > /etc/apt/apt.conf.d/default \ | |
| 34 && echo 'APT::Install-Recommends "false";' > /etc/apt/apt.conf.d/90local-no-recommends \ | |
| 35 && apt-get update \ | |
| 36 && apt-get upgrade -y \ | |
| 37 && apt-get install -y --no-install-recommends \ | |
| 38 git \ | |
| 39 littler \ | |
| 40 libhdf5-dev \ | |
| 41 python-virtualenv \ | |
| 42 && pip install virtualenv \ | |
| 43 && python -m virtualenv "$PLANEMO_VENV_LOCATION" \ | |
| 44 && . "$PLANEMO_VENV_LOCATION"/bin/activate \ | |
| 45 && pip install --upgrade pip setuptools \ | |
| 46 && pip install planemo numpy \ | |
| 47 && planemo conda_init --conda_prefix "$CONDA" \ | |
| 48 && apt-get clean autoclean \ | |
| 49 && apt-get autoremove --yes \ | |
| 50 && rm -rf /var/lib/{apt,dpkg,cache,log}/ \ | |
| 51 && rm -rf /usr/bin/X11 \ | |
| 52 && rm -rf /tmp/* | |
| 53 | |
| 54 SHELL ["/bin/bash", "-c"] | |
| 55 | |
| 56 RUN \ | |
| 57 export VERSION=1.17.2 OS=linux ARCH=amd64 \ | |
| 58 && wget https://dl.google.com/go/go$VERSION.$OS-$ARCH.tar.gz \ | |
| 59 && tar -C /usr/local -xzvf go$VERSION.$OS-$ARCH.tar.gz \ | |
| 60 && rm go$VERSION.$OS-$ARCH.tar.gz \ | |
| 61 && echo 'export PATH=/usr/local/go/bin:$PATH' >> ~/.bashrc \ | |
| 62 && source ~/.bashrc | |
| 63 | |
| 64 RUN \ | |
| 65 echo 'export PATH=/usr/local/go/bin:$PATH' >> ~/.bashrc \ | |
| 66 && source ~/.bashrc \ | |
| 67 && export VERSION=3.10.0 \ | |
| 68 && wget https://github.com/sylabs/singularity/releases/download/v${VERSION}/singularity-ce-${VERSION}.tar.gz \ | |
| 69 && tar -xzf singularity-ce-${VERSION}.tar.gz \ | |
| 70 && cd singularity-ce-${VERSION} \ | |
| 71 && ./mconfig && \ | |
| 72 make -C builddir && \ | |
| 73 make -C builddir install | |
| 74 | |
| 75 CMD [] | |
| 76 |