Mercurial > repos > metexplore > met4j
comparison tools/networkAnalysis/LoadPoint/LoadPoint.xml @ 2:e69a78624877 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit cb957f5d5540a48293fe8487c0cfad78ab439d7c
author | metexplore |
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date | Tue, 19 Jul 2022 14:20:07 +0000 |
parents | 9b162ee6ff8e |
children | 6bd9aad9626d |
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1:9b162ee6ff8e | 2:e69a78624877 |
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1 <?xml version="1.0" encoding="UTF-8"?> | 1 <?xml version="1.0" encoding="UTF-8"?> |
2 <tool id="met4j_LoadPoint" name="LoadPoint" version="0.12.0"> | 2 <tool id="met4j_LoadPoint" name="LoadPoint" version="1.0.1"> |
3 <description>Compute the Load points of a metabolic network. Load points constitute an indicator of lethality and can help identifying drug target.</description> | 3 <description>Compute the Load points of a metabolic network. Load points constitute an indicator of lethality and can help identifying drug target.</description> |
4 <xrefs> | 4 <xrefs> |
5 <xref type="bio.tools">met4j</xref> | 5 <xref type="bio.tools">met4j</xref> |
6 </xrefs> | 6 </xrefs> |
7 <requirements> | 7 <requirements> |
8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.12.0</container> | 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> |
9 </requirements> | 9 </requirements> |
10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.LoadPoint -i "$inputPath" | 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.LoadPoint -i "$inputPath" |
11 #if str($sideCompoundFile) != 'None': | 11 #if str($sideCompoundFile) != 'None': |
12 -s "$sideCompoundFile" | 12 -s "$sideCompoundFile" |
13 #end if | 13 #end if |
16 #end if | 16 #end if |
17 -o "$outputPath" | 17 -o "$outputPath" |
18 ]]></command> | 18 ]]></command> |
19 <inputs> | 19 <inputs> |
20 <param argument="-i" format="sbml" label="input SBML file" name="inputPath" optional="false" type="data" value=""/> | 20 <param argument="-i" format="sbml" label="input SBML file" name="inputPath" optional="false" type="data" value=""/> |
21 <param argument="-s" format="text" label="an optional file containing list of side compounds to ignore" name="sideCompoundFile" optional="true" type="data" value=""/> | 21 <param argument="-s" format="txt" label="an optional file containing list of side compounds to ignore" name="sideCompoundFile" optional="true" type="data" value=""/> |
22 <param argument="-k" label="Number of alternative paths to consider between a pair of connected metabolites" name="k" optional="true" type="text" value="1"> | 22 <param argument="-k" label="Number of alternative paths to consider between a pair of connected metabolites" name="k" optional="true" type="text" value="1"> |
23 <sanitizer invalid_char="_"> | 23 <sanitizer invalid_char="_"> |
24 <valid initial="string.printable"/> | 24 <valid initial="string.printable"/> |
25 </sanitizer> | 25 </sanitizer> |
26 </param> | 26 </param> |