Mercurial > repos > metexplore > met4j
diff build/tools/NetworkSummary/NetworkSummary.xml @ 9:0976a6257300 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 05db35f63cadb9d56dafff594a3507c59cd85273
author | metexplore |
---|---|
date | Fri, 31 Jan 2025 18:28:53 +0000 |
parents | 1274e2a62479 |
children | 6a112eaf8f38 |
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--- a/build/tools/NetworkSummary/NetworkSummary.xml Wed Jul 26 15:33:45 2023 +0000 +++ b/build/tools/NetworkSummary/NetworkSummary.xml Fri Jan 31 18:28:53 2025 +0000 @@ -1,11 +1,11 @@ -<?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_NetworkSummary" name="NetworkSummary" version="1.5.0"> - <description>Create a report summarizing several graph measures characterising the structure of the network.</description> +<?xml version="1.0" encoding="UTF-8" standalone="no"?> +<tool id="met4j_NetworkSummary" name="NetworkSummary" version="develop"> + <description>Create a report summarizing several graph measures characterising the structure of a metabolic network.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.5.0</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:develop</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.NetworkSummary -i "$inputPath" #if str($sideCompoundFile) != 'None': @@ -26,14 +26,92 @@ </outputs> <tests> <test> - <param name="inputPath" value="toy_model.xml"/> - <output name="outputPath"> - <assert_contents> - <has_n_lines min="1"/> - </assert_contents> - </output> - </test> + + + + + + + + + + + + <param name="inputPath" value="toy_model.xml"/> + + + + + + + + + + + + <output name="outputPath"> + + + + + + + + + + + + <assert_contents> + + + + + + + + + + + + <has_n_lines min="1"/> + + + + + + + + + + + + </assert_contents> + + + + + + + + + + + + </output> + + + + + + + + + + + + </test> </tests> - <help><![CDATA[Use a metabolic network in SBML file and an optional list of side compounds, and produce a report summarizing several graph measures characterising the structure of the network.This includes (non-exhaustive list): size and order, connectivity, density, degree distribution, shortest paths length, top centrality nodes...]]></help> + <help><![CDATA[Create a report summarizing several graph measures characterising the structure of a metabolic network. +Use a metabolic network in SBML file and an optional list of side compounds, and produce a report summarizing several graph measures characterising the structure of the network.This includes (non-exhaustive list): size and order, connectivity, density, degree distribution, shortest paths length, top centrality nodes...]]></help> <citations/> </tool>