diff build/tools/NetworkSummary/NetworkSummary.xml @ 9:0976a6257300 draft

planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 05db35f63cadb9d56dafff594a3507c59cd85273
author metexplore
date Fri, 31 Jan 2025 18:28:53 +0000
parents 1274e2a62479
children 6a112eaf8f38
line wrap: on
line diff
--- a/build/tools/NetworkSummary/NetworkSummary.xml	Wed Jul 26 15:33:45 2023 +0000
+++ b/build/tools/NetworkSummary/NetworkSummary.xml	Fri Jan 31 18:28:53 2025 +0000
@@ -1,11 +1,11 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<tool id="met4j_NetworkSummary" name="NetworkSummary" version="1.5.0">
-  <description>Create a report summarizing several graph measures characterising the structure of the network.</description>
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<tool id="met4j_NetworkSummary" name="NetworkSummary" version="develop">
+  <description>Create a report summarizing several graph measures characterising the structure of a metabolic network.</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.5.0</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:develop</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.NetworkSummary -i "$inputPath"
 #if str($sideCompoundFile) != 'None':
@@ -26,14 +26,92 @@
   </outputs>
   <tests>
     <test>
-			<param name="inputPath" value="toy_model.xml"/>
-			<output name="outputPath">
-				<assert_contents>
-					<has_n_lines min="1"/>
-				</assert_contents>
-			</output>
-		</test>
+                                                                  			
+      
+      
+      
+      
+      
+      
+      
+      
+      
+      
+      <param name="inputPath" value="toy_model.xml"/>
+                                                                  			
+      
+      
+      
+      
+      
+      
+      
+      
+      
+      
+      <output name="outputPath">
+                                                                                        				
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        <assert_contents>
+                                                                                                              					
+          
+          
+          
+          
+          
+          
+          
+          
+          
+          
+          <has_n_lines min="1"/>
+                                                                                                              				
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        </assert_contents>
+                                                                                        			
+      
+      
+      
+      
+      
+      
+      
+      
+      
+      
+      </output>
+                                                                  		
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    </test>
   </tests>
-  <help><![CDATA[Use a metabolic network in SBML file and an optional list of side compounds, and produce a report summarizing several graph measures characterising the structure of the network.This includes (non-exhaustive list): size and order, connectivity, density, degree distribution, shortest paths length, top centrality nodes...]]></help>
+  <help><![CDATA[Create a report summarizing several graph measures characterising the structure of a metabolic network.
+Use a metabolic network in SBML file and an optional list of side compounds, and produce a report summarizing several graph measures characterising the structure of the network.This includes (non-exhaustive list): size and order, connectivity, density, degree distribution, shortest paths length, top centrality nodes...]]></help>
   <citations/>
 </tool>