--- a/tools/attributes/ExtractPathways/ExtractPathways.xml	Wed Jul 26 15:33:45 2023 +0000
+++ b/tools/attributes/ExtractPathways/ExtractPathways.xml	Fri Jan 31 18:28:53 2025 +0000
@@ -1,11 +1,11 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<tool id="met4j_ExtractPathways" name="ExtractPathways" version="MET4J_VERSION_TEST">
-  <description>Extract pathway(s) from GSMN</description>
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<tool id="met4j_ExtractPathways" name="ExtractPathways" version="develop">
+  <description>Extract pathway(s) from a SBML file and create a sub-network SBML file</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:MET4J_VERSION_TEST</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:develop</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.ExtractPathways -i "$inputPath"
  -p "$pathwayId"
@@ -24,17 +24,127 @@
   </outputs>
   <tests>
     <test>
+                                                                        
+      
+      
+      
+      
+      
+      
+      
+      
+      
+      
       <param name="inputPath" value="XF_network.sbml"/>
+                                                                        
+      
+      
+      
+      
+      
+      
+      
+      
+      
+      
       <param name="pathwayId" value="Citric_Acid_Cycle+Folate_Metabolism+toto"/>
+                                                                        
+      
+      
+      
+      
+      
+      
+      
+      
+      
+      
       <output ftype="sbml" name="outputPath">
-      <assert_contents>
-        <is_valid_xml/>
-        <has_line_matching expression=".*&lt;reaction.*" n="17"/>
-        <has_line_matching expression=".*groups:id=.*" n="2"/>
-      </assert_contents>
-    </output>
+                                                                                              
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        <assert_contents>
+                                                                                                                      
+          
+          
+          
+          
+          
+          
+          
+          
+          
+          
+          <is_valid_xml/>
+                                                                                                                      
+          
+          
+          
+          
+          
+          
+          
+          
+          
+          
+          <has_line_matching expression=".*&lt;reaction.*" n="17"/>
+                                                                                                                      
+          
+          
+          
+          
+          
+          
+          
+          
+          
+          
+          <has_line_matching expression=".*groups:id=.*" n="2"/>
+                                                                                                                    
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        </assert_contents>
+                                                                                            
+      
+      
+      
+      
+      
+      
+      
+      
+      
+      
+      </output>
+                                                                      
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
     </test>
   </tests>
-  <help><![CDATA["Extract pathway(s) from GSMN: From a SBML file, Create a sub-network SBML file including only a selection of pathways]]></help>
+  <help><![CDATA[Extract pathway(s) from a SBML file and create a sub-network SBML file]]></help>
   <citations/>
 </tool>