--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/attributes/GetMetaboliteAttributes/GetMetaboliteAttributes.xml	Fri Jan 31 18:28:53 2025 +0000
@@ -0,0 +1,94 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<tool id="met4j_GetMetaboliteAttributes" name="GetMetaboliteAttributes" version="develop">
+  <description>Create a tabulated file with metabolite attributes from a SBML file</description>
+  <xrefs>
+    <xref type="bio.tools">met4j</xref>
+  </xrefs>
+  <requirements>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:develop</container>
+  </requirements>
+  <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.GetMetaboliteAttributes -i "$sbml"
+ -o "$outputFile"
+]]></command>
+  <inputs>
+    <param argument="-i" format="sbml" label="Input SBML file" name="sbml" optional="false" type="data" value=""/>
+  </inputs>
+  <outputs>
+    <data format="tsv" name="outputFile"/>
+  </outputs>
+  <tests>
+    <test>
+                                    			
+      
+      
+      
+      
+      
+      <param name="sbml" value="toy_model.xml"/>
+                                    			
+      
+      
+      
+      
+      
+      <output ftype="tsv" name="outputFile">
+                                                				
+        
+        
+        
+        
+        
+        <assert_contents>
+                                                            					
+          
+          
+          
+          
+          
+          <has_n_lines n="9"/>
+                                                            					
+          
+          
+          
+          
+          
+          <has_n_columns n="6"/>
+                                                            					
+          
+          
+          
+          
+          
+          <has_line_matching expression=".*1S/C2H6O/c1-2-3/h3H,2H2,1H3.*" n="1"/>
+                                                            					
+          
+          
+          
+          
+          
+          <has_line_matching expression=".*C.*NC.*" n="1"/>
+                                                            				
+        
+        
+        
+        
+        
+        </assert_contents>
+                                                			
+      
+      
+      
+      
+      
+      </output>
+                                    		
+    
+    
+    
+    
+    
+    </test>
+  </tests>
+  <help><![CDATA[Create a tabulated file with metabolite attributes from a SBML file]]></help>
+  <citations/>
+</tool>