Mercurial > repos > metexplore > met4j

diff tools/convert/Kegg2Sbml/Kegg2Sbml.xml @ 9:0976a6257300 draft

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planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 05db35f63cadb9d56dafff594a3507c59cd85273
author metexplore
date Fri, 31 Jan 2025 18:28:53 +0000
parents 7a6f2380fc1d
children 6a112eaf8f38
line wrap: on
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--- a/tools/convert/Kegg2Sbml/Kegg2Sbml.xml	Wed Jul 26 15:33:45 2023 +0000
+++ b/tools/convert/Kegg2Sbml/Kegg2Sbml.xml	Fri Jan 31 18:28:53 2025 +0000
@@ -1,16 +1,16 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<tool id="met4j_Kegg2Sbml" name="Kegg2Sbml" version="MET4J_VERSION_TEST">
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<tool id="met4j_Kegg2Sbml" name="Kegg2Sbml" version="develop">
   <description>Build a SBML file from KEGG organism-specific pathways. Uses Kegg API.</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:MET4J_VERSION_TEST</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:develop</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Kegg2Sbml#if str($org):
  -org "$org"
 #end if
- -sbml "$sbml"
+ -o "$sbml"
 ]]></command>
   <inputs>
     <param argument="-org" label="[] Kegg org id. Must be 3 letters (" name="org" optional="true" type="text" value="">