--- a/tools/mapping/NameMatcher/NameMatcher.xml	Wed Jul 26 15:33:45 2023 +0000
+++ b/tools/mapping/NameMatcher/NameMatcher.xml	Fri Jan 31 18:28:53 2025 +0000
@@ -1,11 +1,11 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<tool id="met4j_NameMatcher" name="NameMatcher" version="MET4J_VERSION_TEST">
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<tool id="met4j_NameMatcher" name="NameMatcher" version="develop">
   <description>This tool runs edit-distance based fuzzy matching to perform near-similar name matching between a metabolic model and a list of chemical names in a dataset. A harmonization processing is performed on chemical names with substitutions of common patterns among synonyms, in order to create aliases on which classical fuzzy matching can be run efficiently.</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:MET4J_VERSION_TEST</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:develop</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh mapping.NameMatcher#if str($n):
  -nMatch "$n"
@@ -16,7 +16,7 @@
 #if str($col):
  -col "$col"
 #end if
- -sbml "$sbml"
+ -i "$sbml"
  -compound "$input"
 #if str($comment):
  -c "$comment"
@@ -27,7 +27,7 @@
  -o "$outputFile"
 ]]></command>
   <inputs>
-    <param argument="-nMatch" label="[1] Number of match to return per name" name="n" optional="true" type="text" value="1">
+    <param argument="-nMatch" label="[1] Number of matchs to return per name" name="n" optional="true" type="text" value="1">
       <sanitizer invalid_char="_">
         <valid initial="string.printable"/>
       </sanitizer>
@@ -42,7 +42,7 @@
         <valid initial="string.printable"/>
       </sanitizer>
     </param>
-    <param argument="-sbml" format="sbml" label="Original sbml file" name="sbml" optional="false" type="data" value=""/>
+    <param argument="-i" format="sbml" label="Original sbml file" name="sbml" optional="false" type="data" value=""/>
     <param argument="-compound" format="tsv" label="Compound file containing one column with compound names to search among the SBML entries" name="input" optional="false" type="data" value=""/>
     <param argument="-c" label="[#] Comment String in the compound file. The lines beginning by this string won't be read" name="comment" optional="true" type="text" value="#">
       <sanitizer invalid_char="_">