--- a/tools/networkAnalysis/LoadPoint/LoadPoint.xml	Wed Jul 26 15:33:45 2023 +0000
+++ b/tools/networkAnalysis/LoadPoint/LoadPoint.xml	Fri Jan 31 18:28:53 2025 +0000
@@ -1,11 +1,11 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<tool id="met4j_LoadPoint" name="LoadPoint" version="MET4J_VERSION_TEST">
-  <description>Compute the Load points of a metabolic network. Load points constitute an indicator of lethality and can help identifying drug target.</description>
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<tool id="met4j_LoadPoint" name="LoadPoint" version="develop">
+  <description>Compute the Load points of a metabolic network. Load points constitute an indicator of lethality and can help identifying drug targets.</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:MET4J_VERSION_TEST</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:develop</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.LoadPoint -i "$inputPath"
 #if str($sideCompoundFile) != 'None':
@@ -30,16 +30,104 @@
   </outputs>
   <tests>
     <test>
+                                                                        
+      
+      
+      
+      
+      
+      
+      
+      
+      
+      
       <param name="inputPath" value="toy_model.xml"/>
+                                                                        
+      
+      
+      
+      
+      
+      
+      
+      
+      
+      
       <output ftype="tsv" name="outputPath">
+                                                                                                
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
         <assert_contents>
+                                                                                                                        
+          
+          
+          
+          
+          
+          
+          
+          
+          
+          
           <has_n_columns n="3"/>
+                                                                                                                        
+          
+          
+          
+          
+          
+          
+          
+          
+          
+          
           <has_n_lines n="8"/>
+                                                                                                                      
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
         </assert_contents>
+                                                                                              
+      
+      
+      
+      
+      
+      
+      
+      
+      
+      
       </output>
+                                                                      
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
     </test>
   </tests>
-  <help><![CDATA[Compute the Load points of a metabolic network. Load points constitute an indicator of lethality and can help identifying drug target.
+  <help><![CDATA[Compute the Load points of a metabolic network. Load points constitute an indicator of lethality and can help identifying drug targets.
 From Rahman et al. Observing local and global properties of metabolic pathways: ‘load points’ and ‘choke points’ in the metabolic networks. Bioinf. (2006):
 For a given metabolic network, the load L on metabolite m can be defined as :
 ln [(pm/km)/(∑Mi=1Pi)/(∑Mi=1Ki)]
@@ -48,5 +136,7 @@
 P is the total number of shortest paths;
 K is the sum of links in the metabolic network of M metabolites (where M is the number of metabolites in the network).
 Use of the logarithm makes the relevant values more distinguishable.]]></help>
-  <citations/>
+  <citations>
+    <citation type="doi">10.1093/bioinformatics/btl181</citation>
+  </citations>
 </tool>