diff build/tools/MetaboRank/MetaboRank.xml @ 7:1436e9cde9c9 draft

planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 1d31a48bf8328b7a3ad9910971d24b9f453459c5
author metexplore
date Tue, 04 Jul 2023 10:21:26 +0000
parents 7a6f2380fc1d
children 1274e2a62479
line wrap: on
line diff
--- a/build/tools/MetaboRank/MetaboRank.xml	Wed May 17 13:26:37 2023 +0000
+++ b/build/tools/MetaboRank/MetaboRank.xml	Tue Jul 04 10:21:26 2023 +0000
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="met4j_MetaboRank" name="MetaboRank" version="1.3.0">
+<tool id="met4j_MetaboRank" name="MetaboRank" version="1.4.0">
   <description>Compute the MetaboRank, a custom personalized PageRank for metabolic network.</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.3.0</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.4.0</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.MetaboRank -i "$sbmlFilePath"
  -s "$seedsFilePath"
@@ -42,7 +42,19 @@
   <outputs>
     <data format="tsv" name="output"/>
   </outputs>
-  <tests/>
+  <tests>
+    <test>
+      <param name="sbmlFilePath" value="XF_network.sbml"/>
+      <param name="seedsFilePath" value="XF_network_C_Seed.tab"/>
+      <param name="inputSide" value="XF_network_C_Side.tab"/>
+      <output name="output">
+	<assert_contents>
+		<has_n_lines n="1100"/>
+		<has_n_columns n="11"/>
+        </assert_contents>
+      </output>
+    </test>
+  </tests>
   <help><![CDATA[Compute the MetaboRank, a custom personalized PageRank for metabolic network.
 The MetaboRank takes a metabolic network and a list of compounds of interest, and provide a score of relevance for all of the other compounds in the network.
 The MetaboRank can, from metabolomics results, be used to fuel a recommender system highlighting interesting compounds to investigate, retrieve missing identification and drive literature mining.