Mercurial > repos > metexplore > met4j
diff tools/convert/SBMLwizard/test-data/Human-GEM_pathways.xml @ 7:1436e9cde9c9 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 1d31a48bf8328b7a3ad9910971d24b9f453459c5
| author | metexplore |
|---|---|
| date | Tue, 04 Jul 2023 10:21:26 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/convert/SBMLwizard/test-data/Human-GEM_pathways.xml Tue Jul 04 10:21:26 2023 +0000 @@ -0,0 +1,7661 @@ +<?xml version="1.0" encoding="UTF-8"?> +<sbml fbc:required="false" groups:required="false" level="3" version="2" xmlns="http://www.sbml.org/sbml/level3/version2/core" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1"> + <model fbc:strict="true" id="HumanGEM" metaid="HumanGEM" name="Generic genome-scale metabolic model of Homo sapiens"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Genome-scale metabolic models are valuable tools to study metabolism and provide a scaffold for the integrative analysis of omics data. This is the latest version of Human-GEM, which is a genome-scale metabolic model of a generic human cell. The objective of Human-GEM is to serve as a community model for enabling integrative and mechanistic studies of human metabolism.</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#HumanGEM"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/taxonomy/9606"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:listOfObjectives fbc:activeObjective="obj"> + <fbc:objective fbc:id="obj" fbc:type="maximize"> + <fbc:listOfFluxObjectives> + <fbc:fluxObjective fbc:coefficient="1" fbc:reaction="R_biomass_human"/> + </fbc:listOfFluxObjectives> + </fbc:objective> + </fbc:listOfObjectives> + <fbc:listOfGeneProducts> + <fbc:geneProduct fbc:id="ENSG00000023697" fbc:label="ENSG00000023697" fbc:name="ENSG00000023697" metaid="_12915ddf-e017-4a38-a80d-e9982f8ac7cc"> + <notes> + <body 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rdf:resource="https://identifiers.org/hmdb/HMDB00122"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc__D"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:4167"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/5793"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM41"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM99"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14O7" hasOnlySubstanceUnits="true" id="M_m03165c" initialConcentration="0" metaid="_7fccf573-a7f5-4aeb-823a-e1049fe4b5c1" name="sedoheptulose" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C02076</p> + <p>chebi: CHEBI:16802</p> + <p>metanetx.chemical: MNXM44065</p> + <p>formula: C7H14O7</p> + </body> + </notes> + 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<p>pubchem.compound: 6022</p> + <p>metanetx.chemical: MNXM7</p> + <p>formula: C10H12N5O10P2</p> + <p>charge: -3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_521f7ad8-f72e-4338-a6f2-c0a842e7122b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00008"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01341"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adp"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16761"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/6022"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_m01981c" initialConcentration="0" metaid="_28c079d9-0897-4cc1-ac53-057881862cfb" name="glyceraldehyde" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C02154</p> + <p>hmdb: HMDB01051</p> + <p>bigg.metabolite: glyald</p> + <p>chebi: CHEBI:5445</p> + <p>inchi: InChI=1S/C3H6O3/c4-1-3(6)2-5/h1,3,5-6H,2H2/t3-/m0/s1</p> + <p>pubchem.compound: 751</p> + <p>metanetx.chemical: MNXM435</p> + <p>formula: C3H6O3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28c079d9-0897-4cc1-ac53-057881862cfb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02154"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01051"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyald"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:5445"/> + <rdf:li rdf:resource="https://identifiers.org/inchi/InChI=1S/C3H6O3/c4-1-3(6)2-5/h1,3,5-6H,2H2/t3-/m0/s1"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/751"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM435"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6" hasOnlySubstanceUnits="true" id="M_m01682c" initialConcentration="0" metaid="ae904b43-59ad-4e95-88e1-8e34700a9056" name="D-glucitol" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00794</p> + <p>hmdb: HMDB00247</p> + <p>bigg.metabolite: sbt__D</p> + <p>chebi: CHEBI:17924</p> + <p>pubchem.compound: 5780</p> + <p>metanetx.chemical: MNXM469</p> + <p>formula: C6H14O6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae904b43-59ad-4e95-88e1-8e34700a9056"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00794"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00247"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sbt__D"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17924"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/5780"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM469"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H13O9P" hasOnlySubstanceUnits="true" id="M_m02917c" initialConcentration="0" metaid="_42c68707-b6eb-4d18-8cc4-456bd62297d4" name="sorbitol-3-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>pubchem.compound: 129544</p> + <p>metanetx.chemical: MNXM48480</p> + <p>formula: C6H13O9P</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_42c68707-b6eb-4d18-8cc4-456bd62297d4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/129544"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM48480"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="l" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_m02040l" initialConcentration="0" metaid="eb95a981-8590-48ef-b0b9-b05c3507c687" name="H2O" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>lipidmaps: LMST01040128</p> + <p>kegg.compound: C00001</p> + <p>hmdb: HMDB02111</p> + <p>bigg.metabolite: h2o</p> + <p>chebi: CHEBI:15377</p> + <p>pubchem.compound: 962</p> + <p>metanetx.chemical: MNXM2</p> + <p>formula: H2O</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eb95a981-8590-48ef-b0b9-b05c3507c687"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01040128"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00001"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02111"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15377"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/962"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="r" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2" hasOnlySubstanceUnits="true" id="M_m02553r" initialConcentration="0" metaid="a2069c73-802b-49cf-8f06-0e3f0be5669b" name="NADH" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00004</p> + <p>hmdb: HMDB01487</p> + <p>bigg.metabolite: nadh</p> + <p>chebi: CHEBI:16908</p> + <p>pubchem.compound: 928</p> + <p>metanetx.chemical: MNXM10</p> + <p>formula: C21H27N7O14P2</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a2069c73-802b-49cf-8f06-0e3f0be5669b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00004"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01487"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadh"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16908"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/928"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="l" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_m01965l" initialConcentration="0" metaid="_25dd65f2-2228-440c-baf3-9f621a7e5ff0" name="glucose" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00031</p> + <p>hmdb: HMDB00122</p> + <p>bigg.metabolite: glc__D</p> + <p>chebi: CHEBI:4167</p> + <p>pubchem.compound: 5793</p> + 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fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2" hasOnlySubstanceUnits="true" id="M_m02553s" initialConcentration="0" metaid="c0b50a6c-29cd-4c06-82af-9fce71d23255" name="NADH" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00004</p> + <p>hmdb: HMDB01487</p> + <p>bigg.metabolite: nadh</p> + <p>chebi: CHEBI:16908</p> + <p>pubchem.compound: 928</p> + <p>metanetx.chemical: MNXM10</p> + <p>formula: C21H27N7O14P2</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c0b50a6c-29cd-4c06-82af-9fce71d23255"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00004"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01487"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadh"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16908"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/928"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="s" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_m01965s" initialConcentration="0" metaid="ad2dbd72-4542-4c0b-8986-e308b158e31f" name="glucose" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00031</p> + <p>hmdb: HMDB00122</p> + <p>bigg.metabolite: glc__D</p> + <p>chebi: CHEBI:4167</p> + <p>pubchem.compound: 5793</p> + <p>metanetx.chemical: MNXM41 || MNXM99</p> + <p>formula: C6H12O6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ad2dbd72-4542-4c0b-8986-e308b158e31f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00031"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00122"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc__D"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:4167"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/5793"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM41"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM99"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="s" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18O8" hasOnlySubstanceUnits="true" id="M_m01913s" initialConcentration="0" metaid="ae24b707-1474-48c9-bc3e-184c9fc59f80" name="galactosylglycerol" sboTerm="SBO:0000247"> + <notes> + <body 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initialConcentration="0" metaid="dce3ae33-5567-405a-9fd7-b571c4dce0b0" name="H2O" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>lipidmaps: LMST01040128</p> + <p>kegg.compound: C00001</p> + <p>hmdb: HMDB02111</p> + <p>bigg.metabolite: h2o</p> + <p>chebi: CHEBI:15377</p> + <p>pubchem.compound: 962</p> + <p>metanetx.chemical: MNXM2</p> + <p>formula: H2O</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dce3ae33-5567-405a-9fd7-b571c4dce0b0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01040128"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00001"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02111"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15377"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/962"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O11P2" hasOnlySubstanceUnits="true" id="M_m02161c" initialConcentration="0" metaid="_6588a61e-6e8e-4abf-b113-5c7d7bd46a74" name="IDP" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00104</p> + <p>bigg.metabolite: idp</p> + <p>chebi: CHEBI:17808</p> + <p>pubchem.compound: 6831</p> + <p>metanetx.chemical: MNXM495</p> + <p>formula: C10H11N4O11P2</p> + <p>charge: -3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + 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rdf:resource="https://identifiers.org/inchi/InChI=1S/C6H14O6/c7-1-3(9)5(11)6(12)4(10)2-8/h3-12H,1-2H2/t3-,4+,5+,6-"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/11850"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1233"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_m02454c" initialConcentration="0" metaid="a9ce0266-f645-439d-b18d-d18a8b0913d4" name="mannose-1-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00636</p> + <p>hmdb: HMDB06330</p> + <p>bigg.metabolite: man1p</p> + <p>chebi: CHEBI:35374</p> + <p>pubchem.compound: 644175</p> + <p>metanetx.chemical: MNXM721</p> + <p>formula: C6H11O9P</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a9ce0266-f645-439d-b18d-d18a8b0913d4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00636"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB06330"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/man1p"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35374"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/644175"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM721"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5" hasOnlySubstanceUnits="true" id="M_abt_D_c" initialConcentration="0" metaid="_26494228-cd48-4a29-af7c-1b74871615b2" name="D-Arabitol" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>bigg.metabolite: abt__D</p> + <p>inchi: InChI=1S/C5H12O5/c6-1-3(8)5(10)4(9)2-7/h3-10H,1-2H2/t3-,4-/m1/s1</p> + <p>metanetx.chemical: MNXM1018</p> + <p>formula: C5H12O5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_26494228-cd48-4a29-af7c-1b74871615b2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/abt__D"/> + <rdf:li rdf:resource="https://identifiers.org/inchi/InChI=1S/C5H12O5/c6-1-3(8)5(10)4(9)2-7/h3-10H,1-2H2/t3-,4-/m1/s1"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1018"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2" hasOnlySubstanceUnits="true" id="M_m01717c" initialConcentration="0" metaid="_2615d46c-444b-4efb-8351-a5365965023d" name="D-mannose-1,6-bisphosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C03693</p> + <p>pubchem.compound: 3036654</p> + <p>metanetx.chemical: MNXM48557</p> + <p>formula: C6H10O12P2</p> + <p>charge: -4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2615d46c-444b-4efb-8351-a5365965023d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03693"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/3036654"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM48557"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3" hasOnlySubstanceUnits="true" id="M_m02034c" initialConcentration="0" metaid="_949f82be-8e6d-4143-98fb-13e8a920d815" name="GTP" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00044</p> + <p>hmdb: HMDB01273</p> + <p>bigg.metabolite: gtp</p> + <p>chebi: CHEBI:15996</p> + <p>pubchem.compound: 6830</p> + <p>metanetx.chemical: MNXM51</p> + <p>formula: C10H12N5O14P3</p> + <p>charge: -4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_949f82be-8e6d-4143-98fb-13e8a920d815"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00044"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01273"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gtp"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15996"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/6830"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_m01911c" initialConcentration="0" metaid="_71807f0a-77fc-4a83-83ec-587af94cb10d" name="galactose-1-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C03384</p> + <p>metanetx.chemical: MNXM336</p> + <p>formula: C6H11O9P</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_71807f0a-77fc-4a83-83ec-587af94cb10d"> + <bqbiol:is> + 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rdf:about="#a276d8cf-f71a-4d12-bd23-bd4bf3944d06"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00795"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB03418"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tag__D"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:47693"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/92092"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM92401"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_m01842c" initialConcentration="0" metaid="_5c5c742d-cd6a-48ff-87bb-0027c8b6eefe" name="fructose-1-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01094</p> + <p>bigg.metabolite: 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hasOnlySubstanceUnits="true" id="M_m01951c" initialConcentration="0" metaid="e11e80c6-cd80-4ea3-96ca-05f1b24ed09b" name="GDP-mannose" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00096</p> + <p>bigg.metabolite: gdpmann</p> + <p>chebi: CHEBI:15820</p> + <p>pubchem.compound: 18396</p> + <p>metanetx.chemical: MNXM82</p> + <p>formula: C16H23N5O16P2</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e11e80c6-cd80-4ea3-96ca-05f1b24ed09b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00096"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gdpmann"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15820"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/18396"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM82"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_m02846c" initialConcentration="0" metaid="f88cd838-6cfd-4de1-80dd-47d8a4a5ec8c" name="ribulose-5-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00199</p> + <p>bigg.metabolite: ru5p__D</p> + <p>chebi: CHEBI:17363</p> + <p>pubchem.compound: 439184</p> + <p>metanetx.chemical: MNXM145 || MNXM186</p> + <p>formula: C5H9O8P</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f88cd838-6cfd-4de1-80dd-47d8a4a5ec8c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00199"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ru5p__D"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17363"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/439184"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM145"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM186"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H7O7P" hasOnlySubstanceUnits="true" id="M_m01785c" initialConcentration="0" metaid="_81dee1de-9ff0-4d2b-8f6f-99cf059accdf" name="erythrose-4-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00279</p> + <p>bigg.metabolite: e4p</p> + <p>chebi: CHEBI:48153</p> + <p>pubchem.compound: 122357</p> + 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metaid="e6b875ce-6d49-4f17-bac7-17eeb57f18fa" name="D-xylulose-5-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00231</p> + <p>bigg.metabolite: xu5p__D</p> + <p>chebi: CHEBI:16332</p> + <p>pubchem.compound: 439190</p> + <p>metanetx.chemical: MNXM186</p> + <p>formula: C5H9O8P</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e6b875ce-6d49-4f17-bac7-17eeb57f18fa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00231"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xu5p__D"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16332"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/439190"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM186"/> + </rdf:Bag> 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fbc:charge="0" fbc:chemicalFormula="C2H5NO2" hasOnlySubstanceUnits="true" id="M_m01986c" initialConcentration="0" metaid="_9866d694-865b-4df9-ab20-eb10d114f23c" name="glycine" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00037</p> + <p>hmdb: HMDB00123</p> + <p>bigg.metabolite: gly</p> + <p>chebi: CHEBI:15428</p> + <p>inchi: InChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5)</p> + <p>pubchem.compound: 750</p> + <p>metanetx.chemical: MNXM29</p> + <p>formula: C2H5NO2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9866d694-865b-4df9-ab20-eb10d114f23c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00037"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00123"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gly"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15428"/> + <rdf:li rdf:resource="https://identifiers.org/inchi/InChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5)"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/750"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM29"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2" hasOnlySubstanceUnits="true" id="M_m03106c" initialConcentration="0" metaid="_97e640b3-1f1b-4e3b-abda-a1e2d84549fb" name="UDP" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00015</p> + <p>hmdb: HMDB00295</p> + <p>bigg.metabolite: udp</p> + <p>chebi: CHEBI:17659</p> + <p>pubchem.compound: 6031</p> + <p>metanetx.chemical: MNXM17</p> + <p>formula: C9H11N2O12P2</p> + <p>charge: -3</p> + </body> + </notes> + <annotation> + 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sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00984</p> + <p>hmdb: HMDB00143</p> + <p>bigg.metabolite: gal</p> + <p>chebi: CHEBI:28061</p> + <p>pubchem.compound: 439357</p> + <p>metanetx.chemical: MNXM112 || MNXM390</p> + <p>formula: C6H12O6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76b653c7-d3c8-43c3-86cd-767b18a4ec92"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00984"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00143"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gal"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28061"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/439357"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM112"/> + <rdf:li 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rdf:resource="https://identifiers.org/chebi/CHEBI:17659"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/6031"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="s" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_m01910s" initialConcentration="0" metaid="_3719fc9b-15c2-48f2-af95-91380ed8985c" name="galactose" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00984</p> + <p>hmdb: HMDB00143</p> + <p>bigg.metabolite: gal</p> + <p>chebi: CHEBI:28061</p> + <p>pubchem.compound: 439357</p> + <p>metanetx.chemical: MNXM112 || MNXM390</p> + <p>formula: C6H12O6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" 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name="ribose-5-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00117</p> + <p>bigg.metabolite: r5p</p> + <p>chebi: CHEBI:17797</p> + <p>pubchem.compound: 440101</p> + <p>metanetx.chemical: MNXM116 || MNXM15900</p> + <p>formula: C5H9O8P</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c375b7d8-5974-4e81-bae4-6ffd881176d0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00117"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/r5p"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17797"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/440101"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM116"/> + <rdf:li 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rdf:resource="https://identifiers.org/kegg.compound/C01236"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6pgl"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16938"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/439452"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM429"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O14P3" hasOnlySubstanceUnits="true" id="M_m02193c" initialConcentration="0" metaid="d86ee995-ab70-4b25-8ecf-739633917441" name="ITP" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00081</p> + <p>bigg.metabolite: itp</p> + <p>chebi: CHEBI:16039</p> + <p>pubchem.compound: 8583</p> + <p>metanetx.chemical: MNXM423</p> + <p>formula: C10H11N4O14P3</p> + <p>charge: -4</p> + </body> + 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rdf:resource="https://identifiers.org/metanetx.chemical/MNXM2474"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="r" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3" hasOnlySubstanceUnits="true" id="M_m02555r" initialConcentration="0" metaid="_9dd9e24d-3d87-43d4-a57f-7319fda9d5ae" name="NADPH" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00005</p> + <p>hmdb: HMDB00221</p> + <p>bigg.metabolite: nadph</p> + <p>chebi: CHEBI:16474</p> + <p>pubchem.compound: 22833512</p> + <p>metanetx.chemical: MNXM6</p> + <p>formula: C21H26N7O17P3</p> + <p>charge: -4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9dd9e24d-3d87-43d4-a57f-7319fda9d5ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00005"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00221"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadph"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16474"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/22833512"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="s" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3" hasOnlySubstanceUnits="true" id="M_m01983s" initialConcentration="0" metaid="_681859d4-f24a-406f-8efe-f13934d5ffd5" name="glycerol" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00116</p> + <p>hmdb: HMDB00131</p> + <p>bigg.metabolite: glyc</p> + <p>chebi: CHEBI:17522</p> + <p>pubchem.compound: 753</p> + <p>metanetx.chemical: MNXM89612</p> + <p>formula: C3H8O3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_681859d4-f24a-406f-8efe-f13934d5ffd5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00116"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00131"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyc"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17522"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/753"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM89612"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3" hasOnlySubstanceUnits="true" id="M_m02554c" initialConcentration="0" metaid="_9d6ff91d-ad3d-4e8d-9c4a-fce47e8acd53" name="NADP+" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00006</p> + <p>hmdb: HMDB00217</p> + <p>bigg.metabolite: nadp</p> + <p>chebi: CHEBI:18009</p> + <p>pubchem.compound: 5886</p> + <p>metanetx.chemical: MNXM5</p> + <p>formula: C21H25N7O17P3</p> + <p>charge: -3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d6ff91d-ad3d-4e8d-9c4a-fce47e8acd53"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00006"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00217"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadp"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18009"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/5886"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5" hasOnlySubstanceUnits="true" id="M_m02841c" initialConcentration="0" metaid="eb784776-6b61-4d67-9441-2af7f5d1e57f" name="ribitol" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00474</p> + <p>hmdb: HMDB00508</p> + <p>bigg.metabolite: rbt</p> + <p>chebi: CHEBI:15963</p> + <p>pubchem.compound: 827</p> + <p>metanetx.chemical: MNXM1820</p> + <p>formula: C5H12O5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eb784776-6b61-4d67-9441-2af7f5d1e57f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00474"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00508"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/rbt"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15963"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/827"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1820"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_m01845c" initialConcentration="0" metaid="_435773db-71ea-408f-b0f1-852fadf7ea80" name="fructose-6-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00085</p> + <p>bigg.metabolite: f6p</p> + <p>chebi: CHEBI:15946</p> + <p>pubchem.compound: 69507</p> + <p>metanetx.chemical: MNXM89621 || MNXM162235</p> + <p>formula: C6H11O9P</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_435773db-71ea-408f-b0f1-852fadf7ea80"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00085"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/f6p"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15946"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/69507"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM89621"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162235"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="s" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_m02040s" initialConcentration="0" metaid="edc2812f-d50e-40df-9c9b-c62283dd5dfa" name="H2O" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>lipidmaps: LMST01040128</p> + <p>kegg.compound: C00001</p> + <p>hmdb: HMDB02111</p> + <p>bigg.metabolite: h2o</p> + <p>chebi: CHEBI:15377</p> + <p>pubchem.compound: 962</p> + <p>metanetx.chemical: MNXM2</p> + <p>formula: H2O</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#edc2812f-d50e-40df-9c9b-c62283dd5dfa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01040128"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00001"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02111"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15377"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/962"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O15P3" hasOnlySubstanceUnits="true" id="M_m03130c" initialConcentration="0" metaid="_623bdee5-7e3f-429d-8798-39cae174c79d" name="UTP" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00075</p> + <p>hmdb: HMDB00285</p> + <p>bigg.metabolite: utp</p> + <p>chebi: CHEBI:15713</p> + <p>pubchem.compound: 6133</p> + <p>metanetx.chemical: MNXM121</p> + <p>formula: C9H11N2O15P3</p> + <p>charge: -4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_623bdee5-7e3f-429d-8798-39cae174c79d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00075"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00285"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/utp"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15713"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/6133"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM121"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H13O10P" hasOnlySubstanceUnits="true" id="M_m03166c" initialConcentration="0" metaid="be62933b-1dd6-4a8b-87c9-a14eb36e9b49" name="sedoheptulose-1-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C06222</p> + <p>chebi: CHEBI:9082</p> + <p>metanetx.chemical: MNXM12925</p> + <p>formula: C7H13O10P</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#be62933b-1dd6-4a8b-87c9-a14eb36e9b49"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C06222"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:9082"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM12925"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7" hasOnlySubstanceUnits="true" id="M_m01683c" initialConcentration="0" metaid="_7e64183c-bff4-44e2-bdb9-41d69f6bed98" name="D-gluconic acid" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00257</p> + <p>hmdb: HMDB00625</p> + <p>chebi: CHEBI:33198</p> + <p>pubchem.compound: 10690</p> + <p>metanetx.chemical: MNXM341</p> + <p>formula: C6H11O7</p> + <p>charge: -1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7e64183c-bff4-44e2-bdb9-41d69f6bed98"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00257"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00625"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:33198"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/10690"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM341"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="r" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_m02040r" initialConcentration="0" metaid="e3ae9f2d-61b6-4fc2-b932-c251c833a03e" name="H2O" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>lipidmaps: LMST01040128</p> + <p>kegg.compound: C00001</p> + <p>hmdb: HMDB02111</p> + <p>bigg.metabolite: h2o</p> + <p>chebi: CHEBI:15377</p> + <p>pubchem.compound: 962</p> + <p>metanetx.chemical: MNXM2</p> + <p>formula: H2O</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e3ae9f2d-61b6-4fc2-b932-c251c833a03e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01040128"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00001"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02111"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15377"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/962"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="r" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3" hasOnlySubstanceUnits="true" id="M_m02554r" initialConcentration="0" metaid="_2dffc121-cbfa-4ef2-bf72-85b96310b284" name="NADP+" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00006</p> + <p>hmdb: HMDB00217</p> + <p>bigg.metabolite: nadp</p> + <p>chebi: CHEBI:18009</p> + <p>pubchem.compound: 5886</p> + <p>metanetx.chemical: MNXM5</p> + <p>formula: C21H25N7O17P3</p> + <p>charge: -3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2dffc121-cbfa-4ef2-bf72-85b96310b284"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00006"/> + <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00217"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadp"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18009"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/5886"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O7P" hasOnlySubstanceUnits="true" id="M_m00640c" initialConcentration="0" metaid="_646e6e22-6191-458f-b8cb-359247dfbf5f" name="2-deoxy-D-ribose-5-phosphate" sboTerm="SBO:0000247"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00673</p> + <p>bigg.metabolite: 2dr5p</p> + <p>chebi: CHEBI:16132</p> + <p>pubchem.compound: 45934311</p> + <p>metanetx.chemical: MNXM2179</p> + <p>formula: C5H9O7P</p> + <p>charge: -2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_646e6e22-6191-458f-b8cb-359247dfbf5f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00673"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2dr5p"/> + <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16132"/> + <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/45934311"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM2179"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + </listOfSpecies> + <listOfParameters> + <parameter constant="true" id="UPPER_BOUND_1000_0" units="mmol_per_gDW_per_hr" value="1000"/> + <parameter constant="true" id="LOWER_BOUND_1000_0" units="mmol_per_gDW_per_hr" value="-1000"/> + <parameter constant="true" id="LOWER_BOUND_0_0" units="mmol_per_gDW_per_hr" value="0"/> + </listOfParameters> + <listOfReactions> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4831" metaid="a3b700c3-d335-4df3-bb92-f8fc04db5f3d" name="R_HMR_4831" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 1.1.99.13</p> + <p>metanetx.reaction: MNXR107115</p> + <p>kegg.reaction: R01680</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 1.1.99.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a3b700c3-d335-4df3-bb92-f8fc04db5f3d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.99.13"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR107115"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01680"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <listOfReactants> + <speciesReference constant="true" species="M_m02552s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02332s" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02553s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m00812s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039s" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4710" metaid="e6a0e367-66fa-4310-a86d-7dde3669eac3" name="R_HMR_4710" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:3023765</p> + <p>ec-code: 5.4.2.7</p> + <p>metanetx.reaction: MNXR103116</p> + <p>kegg.reaction: R02749</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 5.4.2.7</p> + <p>pmids: 3023765</p> + <p>GENE_ASSOCIATION: ( ENSG00000169299 ) OR ( ENSG00000180953 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e6a0e367-66fa-4310-a86d-7dde3669eac3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.7"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103116"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02749"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3023765"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000169299"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000180953"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m00639c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m00640c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4832" metaid="_0a972dea-1cbc-4140-9dc6-ed7934752c06" name="R_HMR_4832" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:3109378;UNIPROT:P16278</p> + <p>ec-code: 3.2.1.23</p> + <p>metanetx.reaction: MNXR109113 || MNXR105374</p> + <p>kegg.reaction: R04783</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 3.2.1.23</p> + <p>pmids: 3109378</p> + <p>GENE_ASSOCIATION: ENSG00000115850 AND ENSG00000163521 AND ENSG00000170266 AND ENSG00000188167</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0a972dea-1cbc-4140-9dc6-ed7934752c06"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR109113"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105374"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R04783"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3109378"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="ENSG00000170266"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000163521"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000188167"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000115850"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m00810s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01965s" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02040s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m00812s" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4315" metaid="_47e92709-8d94-4b33-a876-2890e1758a66" name="R_HMR_4315" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 1.1.1.14</p> + <p>metanetx.reaction: MNXR104283</p> + <p>kegg.reaction: R00875</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 1.1.1.14</p> + <p>GENE_ASSOCIATION: ENSG00000140263</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_47e92709-8d94-4b33-a876-2890e1758a66"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.14"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104283"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00875"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000140263"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02552c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01682c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01840c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02553c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4316" metaid="dc10854d-832c-4e85-a025-26973915eb3c" name="R_HMR_4316" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 1.1.1.21</p> + <p>metanetx.reaction: MNXR104287</p> + <p>kegg.reaction: R01787</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 1.1.1.21</p> + <p>GENE_ASSOCIATION: ( ENSG00000085662 ) OR ( ENSG00000198074 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dc10854d-832c-4e85-a025-26973915eb3c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104287"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01787"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000198074"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000085662"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02554c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01682c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01965c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02555c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4317" metaid="_36d1db72-1f57-4631-aff2-71a5a6395889" name="R_HMR_4317" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:2211634</p> + <p>ec-code: 2.7.1.-</p> + <p>metanetx.reaction: MNXR103725</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.-</p> + <p>pmids: 2211634</p> + <p>GENE_ASSOCIATION: ( ENSG00000116199 ) OR ( ENSG00000141560 ) OR ( ENSG00000162408 ) OR ( ENSG00000167363 ) OR ( ENSG00000172456 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_36d1db72-1f57-4631-aff2-71a5a6395889"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.-"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103725"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2211634"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000116199"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000141560"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000162408"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000172456"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000167363"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01682c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02917c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4318" metaid="_008e8008-7d8f-4404-bca8-d5c7e6a2b321" name="R_HMR_4318" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.7.1.-</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.-</p> + <p>GENE_ASSOCIATION: ( ENSG00000116199 ) OR ( ENSG00000141560 ) OR ( ENSG00000162408 ) OR ( ENSG00000167363 ) OR ( ENSG00000172456 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_008e8008-7d8f-4404-bca8-d5c7e6a2b321"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.-"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000116199"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000141560"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000162408"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000172456"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000167363"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01840c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01844c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_3944" metaid="e3f7be38-4458-4c4b-9e00-ba70676d46ba" name="R_HMR_3944" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:223665;PMID:4433565;PMID:4436332;PMID:6318818;PMID:6320876;PMID:8612650</p> + <p>ec-code: 2.7.7.9</p> + <p>metanetx.reaction: MNXR100022</p> + <p>kegg.reaction: R00289</p> + <p>bigg.reaction: GALUi</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.7.9</p> + <p>pmids: 223665,4433565,4436332,6318818,6320876,8612650</p> + <p>GENE_ASSOCIATION: ENSG00000169764</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e3f7be38-4458-4c4b-9e00-ba70676d46ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.9"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100022"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00289"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALUi"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/223665"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6318818"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/8612650"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6320876"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4433565"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4436332"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000169764"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m03130c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01967c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m03108c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02759c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4319" metaid="_45d0d167-05cb-4738-8b64-49f3791a4688" name="R_HMR_4319" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:16906315;PMID:7061426;PMID:7150652;PMID:8717435</p> + <p>ec-code: 2.7.1.1</p> + <p>metanetx.reaction: MNXR100614</p> + <p>kegg.reaction: R00760</p> + <p>bigg.reaction: HEX7</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.1</p> + <p>pmids: 7061426,7150652,8717435,16906315</p> + <p>GENE_ASSOCIATION: ( ENSG00000156510 ) OR ( ENSG00000156515 ) OR ( ENSG00000159399 ) OR ( ENSG00000160883 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_45d0d167-05cb-4738-8b64-49f3791a4688"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100614"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00760"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEX7"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7150652"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7061426"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/16906315"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/8717435"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000159399"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000160883"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000156510"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000156515"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01840c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01845c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_RPEc" metaid="_060005cd-e77c-4aec-9a9e-9953a24e631e" name="Ribulose 5-Phosphate 3-Epimerase" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID: 4382012, PMID: 13575411, Harpers illustrated Biochemistry (2009) 28th edition pages 174-183</p> + <p>ec-code: 5.1.3.1</p> + <p>bigg.reaction: RPEc</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 5.1.3.1</p> + <p>pmids: 4382012,13575411</p> + <p>GENE_ASSOCIATION: ENSG00000197713</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_060005cd-e77c-4aec-9a9e-9953a24e631e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.3.1"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RPEc"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/13575411"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4382012"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000197713"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02846c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01761c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_GLYPHEHYc" metaid="_841ed12c-3095-4d2d-88c0-b2d51dc181bc" name="Hydrolysis of Glycylphenylalanine" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: most probable reaction. added during gap filling.</p> + <p>metanetx.reaction: MNXR100357</p> + <p>bigg.reaction: GLYPHEHYc</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_841ed12c-3095-4d2d-88c0-b2d51dc181bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100357"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYPHEHYc"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <listOfReactants> + <speciesReference constant="true" species="M_glyphe_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02040c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02724c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01986c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_8762" metaid="b7a3dbfa-eb0f-42d0-890e-a21c45957a2f" name="R_HMR_8762" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 4.1.2.13</p> + <p>metanetx.reaction: MNXR99466</p> + <p>bigg.reaction: FBP26</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 4.1.2.13</p> + <p>GENE_ASSOCIATION: ( ENSG00000109107 ) OR ( ENSG00000136872 ) OR ( ENSG00000149925 ) OR ( ENSG00000285043 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b7a3dbfa-eb0f-42d0-890e-a21c45957a2f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.13"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99466"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FBP26"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000136872"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000149925"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000109107"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000285043"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01746c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01690c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01981c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_7674" metaid="_3217a74c-f7b4-467b-a857-58e20a23c963" name="R_HMR_7674" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.4.1.22</p> + <p>metanetx.reaction: MNXR105080</p> + <p>kegg.reaction: R00503</p> + <p>bigg.reaction: UGALGTg</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.4.1.22</p> + <p>GENE_ASSOCIATION: ( ENSG00000086062 ) OR ( ENSG00000117411 ) OR ( ENSG00000167531 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3217a74c-f7b4-467b-a857-58e20a23c963"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.22"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105080"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00503"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UGALGTg"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000167531"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000086062"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000117411"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01965g" stoichiometry="1"/> + <speciesReference constant="true" species="M_m03107g" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02039g" stoichiometry="1"/> + <speciesReference constant="true" species="M_m03106g" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02332g" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_8761" metaid="_9b5f5c01-dd04-4b3e-a91e-008503d581a0" name="R_HMR_8761" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.7.1.3</p> + <p>metanetx.reaction: MNXR100938</p> + <p>kegg.reaction: R02927</p> + <p>bigg.reaction: KHK3</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.1.3</p> + <p>GENE_ASSOCIATION: ENSG00000138030</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b5f5c01-dd04-4b3e-a91e-008503d581a0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.3"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100938"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02927"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KHK3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000138030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01745c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01746c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4320" metaid="a8abfc18-6328-4a50-8b08-d17a3f28c8b2" name="R_HMR_4320" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:10085245</p> + <p>ec-code: 2.7.1.-</p> + <p>metanetx.reaction: MNXR103514</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.-</p> + <p>pmids: 10085245</p> + <p>GENE_ASSOCIATION: ( ENSG00000116199 ) OR ( ENSG00000141560 ) OR ( ENSG00000162408 ) OR ( ENSG00000167363 ) OR ( ENSG00000172456 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a8abfc18-6328-4a50-8b08-d17a3f28c8b2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.-"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103514"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/10085245"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000116199"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000141560"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000162408"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000172456"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000167363"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02454c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01717c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_8766" metaid="_67a27b12-ccf1-4623-a972-3aff79c6f80d" name="R_HMR_8766" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 1.1.1.21</p> + <p>metanetx.reaction: MNXR100012</p> + <p>kegg.reaction: R01095</p> + <p>bigg.reaction: GALSIDEtl</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 1.1.1.21</p> + <p>GENE_ASSOCIATION: ( ENSG00000085662 ) OR ( ENSG00000198074 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_67a27b12-ccf1-4623-a972-3aff79c6f80d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100012"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01095"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALSIDEtl"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000198074"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000085662"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01910c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02555c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02554c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01909c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_8767" metaid="_8b416bb5-ba06-4ea8-a781-6758242e28a2" name="R_HMR_8767" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.7.7.12</p> + <p>metanetx.reaction: MNXR100027</p> + <p>kegg.reaction: R00502</p> + <p>bigg.reaction: GALt2_2</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.7.12</p> + <p>GENE_ASSOCIATION: ENSG00000213930</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8b416bb5-ba06-4ea8-a781-6758242e28a2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.12"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100027"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00502"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALt2_2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000213930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m03130c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01322c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02759c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m03107c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_8764" metaid="_4a18991c-afe6-4ab4-9518-7eea4183c3a8" name="R_HMR_8764" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 3.2.1.108</p> + <p>metanetx.reaction: MNXR101000</p> + <p>kegg.reaction: R06114</p> + <p>bigg.reaction: LACZly</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 3.2.1.108</p> + <p>GENE_ASSOCIATION: ENSG00000115850</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4a18991c-afe6-4ab4-9518-7eea4183c3a8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.108"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101000"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R06114"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LACZly"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000115850"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02040l" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02332l" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01910l" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01965l" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4400" metaid="_24e2c246-dc4f-43cb-b817-8363e45ca0f0" name="R_HMR_4400" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:10410995;PMID:2428310;PMID:9603974</p> + <p>ec-code: 1.1.1.271</p> + <p>metanetx.reaction: MNXR100108 || MNXR105384</p> + <p>kegg.reaction: R05692</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 1.1.1.271</p> + <p>pmids: 2428310,9603974,10410995</p> + <p>GENE_ASSOCIATION: ENSG00000104522</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24e2c246-dc4f-43cb-b817-8363e45ca0f0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.271"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100108"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105384"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R05692"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2428310"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/9603974"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/10410995"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000104522"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01949c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02553c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02552c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01950c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4565" metaid="dc55ec50-f182-42db-834f-d0cf1b380879" name="R_HMR_4565" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:8549825;UNIPROT:P37837</p> + <p>ec-code: 2.2.1.2</p> + <p>metanetx.reaction: MNXR104715</p> + <p>kegg.reaction: R08575</p> + <p>bigg.reaction: TALA</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.2.1.2</p> + <p>pmids: 8549825</p> + <p>GENE_ASSOCIATION: ENSG00000177156</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dc55ec50-f182-42db-834f-d0cf1b380879"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.2"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104715"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R08575"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TALA"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/8549825"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000177156"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01939c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02884c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01785c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01845c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4841" metaid="f74d8639-e4ff-4f06-b6de-2c4de6cff989" name="R_HMR_4841" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:15234337</p> + <p>ec-code: 1.2.1.5</p> + <p>metanetx.reaction: MNXR105388</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 1.2.1.5</p> + <p>pmids: 15234337</p> + <p>GENE_ASSOCIATION: ( ENSG00000006534 ) OR ( ENSG00000108602 ) OR ( ENSG00000132746 ) OR ( ENSG00000184254 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f74d8639-e4ff-4f06-b6de-2c4de6cff989"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105388"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15234337"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000108602"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000132746"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000184254"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000006534"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02553c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02843c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02552c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02841c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4401" metaid="_784dbb17-65c3-4806-8d58-6101b6f50cb1" name="R_HMR_4401" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:5646162;PMID:6251080</p> + <p>ec-code: 2.7.7.30</p> + <p>metanetx.reaction: MNXR99061</p> + <p>kegg.reaction: R01951</p> + <p>bigg.reaction: F1PGT</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.7.30</p> + <p>pmids: 5646162,6251080</p> + <p>GENE_ASSOCIATION: ( ENSG00000116783 ) OR ( ENSG00000254685 ) OR ( ENSG00000259030 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_784dbb17-65c3-4806-8d58-6101b6f50cb1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.30"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99061"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01951"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/F1PGT"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/5646162"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6251080"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000116783"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000254685"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000259030"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01950c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02759c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02034c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02372c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_RE1342C" metaid="_35970be8-355d-4991-bcbd-bf773e56c260" name="Aldehyde Reductase" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:9537432</p> + <p>ec-code: 1.1.1.21</p> + <p>metanetx.reaction: MNXR103511</p> + <p>bigg.reaction: RE1342C</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 1.1.1.21</p> + <p>pmids: 9537432</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_35970be8-355d-4991-bcbd-bf773e56c260"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103511"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE1342C"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/9537432"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <listOfReactants> + <speciesReference constant="true" species="M_m02552c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01682c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02553c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01965c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4402" metaid="f3a0a958-fed9-477e-ae39-8cdedad1f5bc" name="R_HMR_4402" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:12056818;PMID:12413479</p> + <p>ec-code: 2.7.1.52</p> + <p>metanetx.reaction: MNXR99595 || MNXR107992</p> + <p>kegg.reaction: R03161</p> + <p>bigg.reaction: FK</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.52</p> + <p>pmids: 12056818,12413479</p> + <p>GENE_ASSOCIATION: ENSG00000157353</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f3a0a958-fed9-477e-ae39-8cdedad1f5bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.52"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99595"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR107992"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03161"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FK"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12056818"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12413479"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000157353"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01159c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02372c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4567" metaid="_9ff90316-748a-4f8a-91f7-86e61fbd681e" name="R_HMR_4567" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:4084320;PMID:4272358</p> + <p>ec-code: 2.7.1.11</p> + <p>metanetx.reaction: MNXR105338 || MNXR102510</p> + <p>kegg.reaction: R01843</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.7.1.11</p> + <p>pmids: 4084320,4272358</p> + <p>GENE_ASSOCIATION: ( ENSG00000067057 ) OR ( ENSG00000141959 ) OR ( ENSG00000152556 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ff90316-748a-4f8a-91f7-86e61fbd681e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105338"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR102510"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01843"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4272358"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4084320"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000067057"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000141959"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000152556"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02883c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02884c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4403" metaid="_41178734-fe7b-47f2-b84a-e69e20728adb" name="R_HMR_4403" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:457669;PMID:5050937</p> + <p>ec-code: 5.3.1.25</p> + <p>metanetx.reaction: MNXR99468 || MNXR107994</p> + <p>kegg.reaction: R03163</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 5.3.1.25</p> + <p>pmids: 457669,5050937</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_41178734-fe7b-47f2-b84a-e69e20728adb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.25"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99468"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR107994"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03163"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/457669"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/5050937"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <listOfReactants> + <speciesReference constant="true" species="M_m01159c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02373c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4568" metaid="_414cb744-0f0d-4837-b547-ca5fc7b2529a" name="R_HMR_4568" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:11945275</p> + <p>ec-code: 2.7.1.11</p> + <p>metanetx.reaction: MNXR105339</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.7.1.11</p> + <p>pmids: 11945275</p> + <p>GENE_ASSOCIATION: ( ENSG00000067057 ) OR ( ENSG00000141959 ) OR ( ENSG00000152556 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_414cb744-0f0d-4837-b547-ca5fc7b2529a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105339"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/11945275"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000067057"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000141959"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000152556"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m03106c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02883c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m03130c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02884c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4128" metaid="_093ee677-4ba5-4528-856e-60f371fedfe8" name="R_HMR_4128" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:191453;PMID:845161</p> + <p>ec-code: 5.1.3.2</p> + <p>metanetx.reaction: MNXR105057</p> + <p>kegg.reaction: R00291</p> + <p>bigg.reaction: UDPG4E</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 5.1.3.2</p> + <p>pmids: 191453,845161</p> + <p>GENE_ASSOCIATION: ENSG00000117308</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_093ee677-4ba5-4528-856e-60f371fedfe8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.3.2"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105057"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00291"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPG4E"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/845161"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/191453"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000117308"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m03107c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m03108c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_8768" metaid="_8bcb4fd6-2dbe-4ec7-a1ff-10766373c9c1" name="R_HMR_8768" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 1.1.1.271</p> + <p>metanetx.reaction: MNXR100108</p> + <p>kegg.reaction: R05692</p> + <p>bigg.reaction: GFUCS</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 1.1.1.271</p> + <p>GENE_ASSOCIATION: ENSG00000104522</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8bcb4fd6-2dbe-4ec7-a1ff-10766373c9c1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.271"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100108"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R05692"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GFUCS"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000104522"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01949c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02555c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01950c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02554c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4404" metaid="_53153327-0fb7-4573-bd62-024a6dbd9d90" name="R_HMR_4404" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:234468;PMID:2495942;PMID:2843500;PMID:3089282;PMID:5141430;PMID:7115375;PMID:7154948;PMID:9924800</p> + <p>ec-code: 2.2.1.1</p> + <p>metanetx.reaction: MNXR104869 || MNXR106812</p> + <p>kegg.reaction: R01067</p> + <p>bigg.reaction: TKT2</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.2.1.1</p> + <p>pmids: 234468,2495942,2843500,3089282,5141430,7115375,7154948,9924800</p> + <p>GENE_ASSOCIATION: ( ENSG00000007350 ) OR ( ENSG00000151005 ) OR ( ENSG00000163931 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_53153327-0fb7-4573-bd62-024a6dbd9d90"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.1"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104869"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106812"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01067"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TKT2"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2495942"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7115375"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/234468"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2843500"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/9924800"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/5141430"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7154948"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3089282"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000163931"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000007350"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000151005"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01761c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01785c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01939c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01845c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4490" metaid="f0088831-0d71-400f-b3b3-78d25c47e1f4" name="R_HMR_4490" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:16906315;PMID:7061426;PMID:7150652;PMID:8717435</p> + <p>ec-code: 2.7.1.1</p> + <p>metanetx.reaction: MNXR95795</p> + <p>kegg.reaction: R01326</p> + <p>bigg.reaction: HEX4</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.1</p> + <p>pmids: 7061426,7150652,8717435,16906315</p> + <p>GENE_ASSOCIATION: ( ENSG00000156510 ) OR ( ENSG00000156515 ) OR ( ENSG00000159399 ) OR ( ENSG00000160883 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f0088831-0d71-400f-b3b3-78d25c47e1f4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95795"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01326"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEX4"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7150652"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7061426"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/16906315"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/8717435"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000159399"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000160883"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000156510"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000156515"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02453c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02455c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4052" metaid="f3773fb2-a697-4ad0-b9c8-70f626e44da0" name="R_HMR_4052" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:11101685;PMID:7572345</p> + <p>ec-code: 2.7.6.1</p> + <p>metanetx.reaction: MNXR106802 || MNXR103215</p> + <p>kegg.reaction: R01049</p> + <p>bigg.reaction: PRPPS</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.7.6.1</p> + <p>pmids: 7572345,11101685</p> + <p>GENE_ASSOCIATION: ( ENSG00000101911 ) OR ( ENSG00000147224 ) OR ( ENSG00000229937 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f3773fb2-a697-4ad0-b9c8-70f626e44da0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.6.1"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106802"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103215"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01049"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PRPPS"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7572345"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/11101685"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000147224"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000229937"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000101911"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02845c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01334c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02806c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4130" metaid="a1e6f11c-2c01-45d7-aa41-39764568a681" name="R_HMR_4130" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.7.1.6</p> + <p>metanetx.reaction: MNXR99985</p> + <p>bigg.reaction: GALKr</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.1.6</p> + <p>GENE_ASSOCIATION: ( ENSG00000108479 ) OR ( ENSG00000156958 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a1e6f11c-2c01-45d7-aa41-39764568a681"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.6"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99985"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALKr"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000108479"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000156958"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01910c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01322c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_8653" metaid="_22f2d06f-d7c0-4287-a929-46293b17c7af" name="R_HMR_8653" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 3.1.1.31</p> + <p>metanetx.reaction: MNXR99907</p> + <p>kegg.reaction: R10520</p> + <p>bigg.reaction: G6PDH2r</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 3.1.1.31</p> + <p>GENE_ASSOCIATION: ( ENSG00000049239 ) OR ( ENSG00000130313 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_22f2d06f-d7c0-4287-a929-46293b17c7af"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.31"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99907"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R10520"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G6PDH2r"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000049239"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000130313"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01961r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02553r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039r" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01968r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02552r" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4131" metaid="fba7f9cd-fa2b-4c7a-a4a5-02318cc57a68" name="R_HMR_4131" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.7.7.12</p> + <p>metanetx.reaction: MNXR105090</p> + <p>kegg.reaction: R00955</p> + <p>bigg.reaction: UGLT</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.7.12</p> + <p>GENE_ASSOCIATION: ENSG00000213930</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fba7f9cd-fa2b-4c7a-a4a5-02318cc57a68"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.12"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105090"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00955"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UGLT"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000213930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m03107c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01967c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m03108c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01322c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4297" metaid="c5cf5503-7811-4ea5-b3d5-159879fdbf6a" name="R_HMR_4297" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:7506254;PMID:7688733</p> + <p>ec-code: 2.7.1.105</p> + <p>metanetx.reaction: MNXR102508</p> + <p>kegg.reaction: R00757</p> + <p>bigg.reaction: PFK26</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.105</p> + <p>pmids: 7506254,7688733</p> + <p>GENE_ASSOCIATION: ( ENSG00000114268 ) OR ( ENSG00000123836 ) OR ( ENSG00000158571 ) OR ( ENSG00000170525 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5cf5503-7811-4ea5-b3d5-159879fdbf6a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.105"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR102508"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00757"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PFK26"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7688733"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7506254"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000123836"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000170525"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000114268"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000158571"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01845c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01843c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4132" metaid="_7fd1e0ad-5113-42aa-963e-6215ef481843" name="R_HMR_4132" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:10993714</p> + <p>ec-code: 2.7.7.12</p> + <p>metanetx.reaction: MNXR105090</p> + <p>kegg.reaction: R00955</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.7.12</p> + <p>pmids: 10993714</p> + <p>GENE_ASSOCIATION: ENSG00000213930</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7fd1e0ad-5113-42aa-963e-6215ef481843"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.12"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105090"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00955"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/10993714"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000213930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01911c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m03108c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m03107c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01967c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_0454" metaid="c76ba226-384c-4b57-84b2-6140f038c756" name="R_HMR_0454" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:12125098</p> + <p>ec-code: 2.7.1.28</p> + <p>metanetx.reaction: MNXR104940</p> + <p>kegg.reaction: R01059</p> + <p>bigg.reaction: TRIOK</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.28</p> + <p>pmids: 12125098</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c76ba226-384c-4b57-84b2-6140f038c756"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.28"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104940"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01059"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRIOK"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12125098"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01981c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01939c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4774" metaid="_3d04496d-3c88-44ef-a0f4-1566551ef2a7" name="R_HMR_4774" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:131802;PMID:1810251;PMID:193556;PMID:2987258;PMID:6091737</p> + <p>ec-code: 2.7.1.11</p> + <p>metanetx.reaction: MNXR108039 || MNXR105355</p> + <p>kegg.reaction: R03237</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.1.11</p> + <p>pmids: 131802,193556,1810251,2987258,6091737</p> + <p>GENE_ASSOCIATION: ( ENSG00000067057 ) OR ( ENSG00000141959 ) OR ( ENSG00000152556 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d04496d-3c88-44ef-a0f4-1566551ef2a7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR108039"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105355"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03237"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/1810251"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6091737"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/193556"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2987258"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/131802"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000067057"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000141959"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000152556"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01424c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02955c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01623c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01746c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4775" metaid="b71ca27b-2233-4904-bf68-12c5c97c9300" name="R_HMR_4775" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:131802;PMID:1810251</p> + <p>ec-code: 2.7.1.11</p> + <p>metanetx.reaction: MNXR105356 || MNXR108041</p> + <p>kegg.reaction: R03239</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.1.11</p> + <p>pmids: 131802,1810251</p> + <p>GENE_ASSOCIATION: ( ENSG00000067057 ) OR ( ENSG00000141959 ) OR ( ENSG00000152556 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b71ca27b-2233-4904-bf68-12c5c97c9300"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105356"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR108041"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03239"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/1810251"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/131802"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000067057"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000141959"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000152556"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02193c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01746c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02161c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02955c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4414" metaid="b4722a38-261b-454e-93b5-c84c4aa10035" name="R_HMR_4414" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:8908517</p> + <p>ec-code: 2.7.1.6</p> + <p>metanetx.reaction: MNXR99985</p> + <p>kegg.reaction: R01092</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.1.6</p> + <p>pmids: 8908517</p> + <p>GENE_ASSOCIATION: ( ENSG00000108479 ) OR ( ENSG00000156958 ) OR ( ENSG00000166262 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b4722a38-261b-454e-93b5-c84c4aa10035"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.6"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99985"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01092"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/8908517"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000108479"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000156958"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000166262"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01910c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01911c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4415" metaid="_0e1118fe-ec5c-4f40-b7ba-0a043f91a0d0" name="R_HMR_4415" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:6786877</p> + <p>ec-code: 3.2.1.108 || 3.2.1.23</p> + <p>metanetx.reaction: MNXR101000</p> + <p>kegg.reaction: R01100</p> + <p>bigg.reaction: LACZe</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 3.2.1.23;3.2.1.108</p> + <p>pmids: 6786877</p> + <p>GENE_ASSOCIATION: ENSG00000115850 AND ENSG00000163521 AND ENSG00000170266 AND ENSG00000188167</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0e1118fe-ec5c-4f40-b7ba-0a043f91a0d0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.108"/> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101000"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01100"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LACZe"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6786877"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="ENSG00000170266"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000163521"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000188167"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000115850"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02040s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02332s" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01910s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01965s" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4416" metaid="b1a0bbd3-03c8-481d-87b1-808aebb90ef2" name="R_HMR_4416" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:3569296</p> + <p>ec-code: 3.2.1.23 || 3.2.1.22</p> + <p>metanetx.reaction: MNXR100115</p> + <p>kegg.reaction: R01104</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 3.2.1.22;3.2.1.23</p> + <p>pmids: 3569296</p> + <p>GENE_ASSOCIATION: ( ENSG00000102393 ) OR ( ENSG00000170266 ) OR ( ENSG00000241343 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b1a0bbd3-03c8-481d-87b1-808aebb90ef2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.22"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100115"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01104"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3569296"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000102393"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000170266"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000241343"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02040s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01913s" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01910s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01983s" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_FBA5" metaid="f429561f-98d2-434a-860a-ddff29f21ebd" name="D-Tagatose 1-Phosphate D-Glyceraldehyde-3-Phosphate-Lyase" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:2996495,PMID:6284103,PMID:6298387</p> + <p>ec-code: 4.1.2.13</p> + <p>metanetx.reaction: MNXR99463</p> + <p>bigg.reaction: FBA5</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 4.1.2.13</p> + <p>pmids: 2996495,6284103,6298387</p> + <p>GENE_ASSOCIATION: ENSG00000136872</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f429561f-98d2-434a-860a-ddff29f21ebd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.13"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99463"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FBA5"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2996495"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6298387"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6284103"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000136872"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tag1p_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01690c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01981c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_PGLc" metaid="_3648fd3f-6668-495c-b2e0-e7ce9105a0bd" name="6-Phosphogluconolactonase" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID: 4382012, PMID: 13575411, Harpers illustrated Biochemistry (2009) 28th edition pages 174-183</p> + <p>ec-code: 3.1.1.31</p> + <p>bigg.reaction: PGLc</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 3.1.1.31</p> + <p>pmids: 4382012,13575411</p> + <p>GENE_ASSOCIATION: ENSG00000130313</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3648fd3f-6668-495c-b2e0-e7ce9105a0bd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.31"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PGLc"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/13575411"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4382012"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000130313"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02040c" stoichiometry="3"/> + <speciesReference constant="true" species="M_m01961c" stoichiometry="3"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01169c" stoichiometry="3"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4383" metaid="_0ea26d9f-b8bd-4193-8626-31efb5856906" name="R_HMR_4383" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:10571009;PMID:12231825;PMID:15033941;PMID:2085314;PMID:7702210;PMID:8381960</p> + <p>ec-code: 5.3.1.8</p> + <p>metanetx.reaction: MNXR106679 || MNXR101382</p> + <p>kegg.reaction: R00772</p> + <p>bigg.reaction: MAN6PI</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 5.3.1.8</p> + <p>pmids: 2085314,7702210,8381960,10571009,12231825,15033941</p> + <p>GENE_ASSOCIATION: ENSG00000178802</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ea26d9f-b8bd-4193-8626-31efb5856906"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.8"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106679"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101382"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00772"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MAN6PI"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/10571009"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15033941"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7702210"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/8381960"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12231825"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2085314"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000178802"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01845c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02455c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_GNDc" metaid="ef163958-45f6-498d-acb0-0e2d72945b19" name="Phosphogluconate Dehydrogenase" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID: 4382012, PMID: 13575411, Harpers illustrated Biochemistry (2009) 28th edition pages 174-183</p> + <p>ec-code: 1.1.1.44</p> + <p>bigg.reaction: GNDc</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 1.1.1.44</p> + <p>pmids: 4382012,13575411</p> + <p>GENE_ASSOCIATION: ENSG00000142657</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ef163958-45f6-498d-acb0-0e2d72945b19"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.44"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GNDc"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/13575411"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4382012"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000142657"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01169c" stoichiometry="3"/> + <speciesReference constant="true" species="M_m02554c" stoichiometry="3"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02846c" stoichiometry="3"/> + <speciesReference constant="true" species="M_m02555c" stoichiometry="3"/> + <speciesReference constant="true" species="M_m01596c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4385" metaid="_83fb9834-0745-47d2-b88f-9cb966a0eefd" name="R_HMR_4385" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:10593562;PMID:12889654;PMID:15361947</p> + <p>ec-code: 5.4.2.8</p> + <p>metanetx.reaction: MNXR101729</p> + <p>kegg.reaction: R01818</p> + <p>bigg.reaction: PMANM</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 5.4.2.8</p> + <p>pmids: 10593562,12889654,15361947</p> + <p>GENE_ASSOCIATION: ( ENSG00000100413 ) OR ( ENSG00000100417 ) OR ( ENSG00000140650 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_83fb9834-0745-47d2-b88f-9cb966a0eefd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.8"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101729"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01818"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PMANM"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15361947"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12889654"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/10593562"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000140650"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000100417"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000100413"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02455c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02454c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4386" metaid="_1b139dd2-60dd-4d29-b9db-c7cd0c97d62b" name="R_HMR_4386" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:13876695</p> + <p>ec-code: 2.7.7.13 || 2.7.7.22</p> + <p>metanetx.reaction: MNXR101376</p> + <p>kegg.reaction: R00883</p> + <p>bigg.reaction: MAN1PT2</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.7.22;2.7.7.13</p> + <p>pmids: 13876695</p> + <p>GENE_ASSOCIATION: ( ENSG00000144591 ) OR ( ENSG00000164068 ) OR ( ENSG00000173540 ) OR ( ENSG00000176020 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1b139dd2-60dd-4d29-b9db-c7cd0c97d62b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.13"/> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.22"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101376"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00883"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MAN1PT2"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/13876695"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000164068"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000176020"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000173540"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000144591"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01948c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02454c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01951c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02751c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_ABTD1" metaid="_030d6c02-c016-4e4d-a3a0-100f8b573715" name="L-Arabinitol 4-Dehydrogenase" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID: 16435225</p> + <p>ec-code: 3.1.1.4</p> + <p>bigg.reaction: ABTD1</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 3.1.1.4</p> + <p>pmids: 16435225</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_030d6c02-c016-4e4d-a3a0-100f8b573715"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ABTD1"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/16435225"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <listOfReactants> + <speciesReference constant="true" species="M_m02552c" stoichiometry="1"/> + <speciesReference constant="true" species="M_abt_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02553c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02425c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4387" metaid="_642e9305-23e4-4e3a-b6ef-fe32f9051987" name="R_HMR_4387" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:10025667;PMID:8549746;PMID:9451026</p> + <p>ec-code: 2.7.7.13</p> + <p>metanetx.reaction: MNXR101375</p> + <p>kegg.reaction: R00885</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.7.13</p> + <p>pmids: 8549746,9451026,10025667</p> + <p>GENE_ASSOCIATION: ( ENSG00000144591 ) OR ( ENSG00000173540 ) OR ( ENSG00000176020 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_642e9305-23e4-4e3a-b6ef-fe32f9051987"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.13"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101375"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00885"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/8549746"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/9451026"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/10025667"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000176020"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000173540"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000144591"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02454c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02034c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01951c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02759c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_9799" metaid="_57352ce2-7ff7-4510-8c37-fe046275ab37" name="R_HMR_9799" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.7.1.14</p> + <p>metanetx.reaction: MNXR107202</p> + <p>kegg.reaction: R01844</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.7.1.14</p> + <p>GENE_ASSOCIATION: ENSG00000197417</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_57352ce2-7ff7-4510-8c37-fe046275ab37"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.14"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR107202"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01844"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000197417"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m03165c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02884c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4303" metaid="_073189d4-50c2-4cf1-b826-23bdb07507f8" name="R_HMR_4303" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:12055199</p> + <p>ec-code: 3.2.1.48 || 3.2.1.10 || 3.2.1.20</p> + <p>metanetx.reaction: MNXR104638</p> + <p>kegg.reaction: R00801</p> + <p>bigg.reaction: SUCRe</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 3.2.1.10;3.2.1.20;3.2.1.48</p> + <p>pmids: 12055199</p> + <p>GENE_ASSOCIATION: ( ENSG00000090402 ) OR ( ENSG00000171298 ) OR ( ENSG00000214013 ) OR ( ENSG00000257335 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_073189d4-50c2-4cf1-b826-23bdb07507f8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.48"/> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.10"/> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.20"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104638"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00801"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUCRe"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12055199"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000171298"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000257335"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000090402"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000214013"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02040s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02945s" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01965s" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01840s" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4501" metaid="_94343e1c-c62d-4149-953b-237ef55a08ca" name="R_HMR_4501" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:13385248;PMID:2495942;UNIPROT:P29401</p> + <p>ec-code: 2.2.1.1</p> + <p>metanetx.reaction: MNXR107105 || MNXR104868</p> + <p>kegg.reaction: R01641</p> + <p>bigg.reaction: TKT1</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.2.1.1</p> + <p>pmids: 2495942,13385248</p> + <p>GENE_ASSOCIATION: ( ENSG00000007350 ) OR ( ENSG00000151005 ) OR ( ENSG00000163931 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_94343e1c-c62d-4149-953b-237ef55a08ca"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.1"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR107105"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104868"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01641"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TKT1"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2495942"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/13385248"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000163931"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000007350"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000151005"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02845c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01761c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01939c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02884c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4304" metaid="_4a19056f-9291-4536-aee2-1f674e94327c" name="R_HMR_4304" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:15774558;PMID:16756494;PMID:2753047;PMID:4169027</p> + <p>ec-code: 1.1.1.49</p> + <p>metanetx.reaction: MNXR99907</p> + <p>kegg.reaction: R00835</p> + <p>bigg.reaction: G6PDH2er</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 1.1.1.49</p> + <p>pmids: 2753047,4169027,15774558,16756494</p> + <p>GENE_ASSOCIATION: ENSG00000160211</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4a19056f-9291-4536-aee2-1f674e94327c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.49"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99907"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00835"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G6PDH2er"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/16756494"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4169027"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2753047"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15774558"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000160211"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01968r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02554r" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01961r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02555r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039r" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4623" metaid="_977981ea-549f-4af8-8bc9-8f06a599033d" name="R_HMR_4623" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:3858849;PMID:3932573;PMID:6852020;PMID:971315</p> + <p>ec-code: 3.1.1.31</p> + <p>metanetx.reaction: MNXR102539</p> + <p>kegg.reaction: R02035</p> + <p>bigg.reaction: PGLer</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 3.1.1.31</p> + <p>pmids: 971315,3858849,3932573,6852020</p> + <p>GENE_ASSOCIATION: ( ENSG00000049239 ) OR ( ENSG00000130313 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_977981ea-549f-4af8-8bc9-8f06a599033d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.31"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR102539"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02035"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PGLer"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3932573"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3858849"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6852020"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/971315"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000049239"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000130313"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01961r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02040r" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01169r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039r" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4306" metaid="c51de190-dee0-491f-93ed-9eebe9f571ff" name="R_HMR_4306" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:15774558;PMID:16756494;PMID:2753047;PMID:4169027</p> + <p>ec-code: 1.1.1.49</p> + <p>metanetx.reaction: MNXR99907</p> + <p>kegg.reaction: R00835</p> + <p>bigg.reaction: G6PDH2r</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 1.1.1.49</p> + <p>pmids: 2753047,4169027,15774558,16756494</p> + <p>GENE_ASSOCIATION: ENSG00000160211</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c51de190-dee0-491f-93ed-9eebe9f571ff"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.49"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99907"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00835"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G6PDH2r"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/16756494"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4169027"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2753047"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15774558"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000160211"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01961c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02555c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02554c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01968c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4625" metaid="ce25ac8c-d5cd-45bf-aa0f-b5091cc8f920" name="R_HMR_4625" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:3858849;PMID:3932573;PMID:6852020;PMID:971315</p> + <p>ec-code: 3.1.1.31</p> + <p>metanetx.reaction: MNXR102539</p> + <p>kegg.reaction: R02035</p> + <p>bigg.reaction: PGL</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 3.1.1.31</p> + <p>pmids: 971315,3858849,3932573,6852020</p> + <p>GENE_ASSOCIATION: ( ENSG00000049239 ) OR ( ENSG00000130313 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ce25ac8c-d5cd-45bf-aa0f-b5091cc8f920"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.31"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR102539"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02035"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PGL"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3932573"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3858849"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6852020"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/971315"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000049239"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000130313"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02040c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01961c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01169c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4706" metaid="_76f44f32-e827-409c-9f89-d39564cf363b" name="R_HMR_4706" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:11245921;PMID:12379646;PMID:15170386;PMID:15581487;PMID:16316985;PMID:2837207</p> + <p>ec-code: 3.1.3.46 || 3.1.3.11</p> + <p>metanetx.reaction: MNXR106671 || MNXR99466</p> + <p>kegg.reaction: R00763</p> + <p>bigg.reaction: FBP26</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 3.1.3.46;3.1.3.11</p> + <p>pmids: 2837207,11245921,12379646,15170386,15581487,16316985</p> + <p>GENE_ASSOCIATION: ( ENSG00000078237 ) OR ( ENSG00000108813 ) OR ( ENSG00000114268 ) OR ( ENSG00000123836 ) OR ( ENSG00000158571 ) OR ( ENSG00000170525 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76f44f32-e827-409c-9f89-d39564cf363b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.46"/> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.11"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106671"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99466"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00763"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FBP26"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/16316985"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12379646"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15581487"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15170386"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/11245921"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2837207"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000123836"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000170525"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000108813"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000158571"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000078237"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000114268"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02040c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01843c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02751c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01845c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_G6PDH2c" metaid="_65f65765-bf14-48a2-8308-72aa949d0dd7" name="Glucose 6-Phosphate Dehydrogenase" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID: 4382012, PMID: 13575411, Harpers illustrated Biochemistry (2009) 28th edition pages 174-183</p> + <p>bigg.reaction: G6PDH2c</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>pmids: 4382012,13575411</p> + <p>GENE_ASSOCIATION: ENSG00000160211</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_65f65765-bf14-48a2-8308-72aa949d0dd7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G6PDH2c"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/13575411"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4382012"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000160211"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02554c" stoichiometry="3"/> + <speciesReference constant="true" species="M_m01968c" stoichiometry="3"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01961c" stoichiometry="3"/> + <speciesReference constant="true" species="M_m02555c" stoichiometry="3"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_8074" metaid="c6249ea1-2eba-44b9-b389-c3bb870070af" name="R_HMR_8074" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.7.1.15</p> + <p>metanetx.reaction: MNXR97787</p> + <p>kegg.reaction: R02750</p> + <p>bigg.reaction: DRPA</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.7.1.15</p> + <p>GENE_ASSOCIATION: ( ENSG00000158019 ) OR ( ENSG00000171174 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c6249ea1-2eba-44b9-b389-c3bb870070af"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.15"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97787"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02750"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DRPA"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000171174"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000158019"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01672c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m00640c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4350" metaid="cd869f58-5452-4226-8cfe-b859d4054a8f" name="R_HMR_4350" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:13295274;PMID:17618002</p> + <p>ec-code: 2.7.1.15</p> + <p>metanetx.reaction: MNXR106804 || MNXR103431</p> + <p>kegg.reaction: R01051</p> + <p>bigg.reaction: RBK</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.7.1.15</p> + <p>pmids: 13295274,17618002</p> + <p>GENE_ASSOCIATION: ( ENSG00000158019 ) OR ( ENSG00000171174 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd869f58-5452-4226-8cfe-b859d4054a8f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.15"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106804"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103431"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01051"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RBK"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/13295274"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/17618002"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000171174"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000158019"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02845c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02843c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_KHK3" metaid="_2f83a279-1e91-4c20-ab35-0fbd94c31885" name="Ketohexokinase (D-Tagatose)" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:2996495,PMID:6284103,PMID:6298387</p> + <p>ec-code: 2.7.1.3</p> + <p>metanetx.reaction: MNXR100938</p> + <p>bigg.reaction: KHK3</p> + <p>SUBSYSTEM: Galactose metabolism</p> + <p>EC_NUMBER: 2.7.1.3</p> + <p>pmids: 2996495,6284103,6298387</p> + <p>GENE_ASSOCIATION: ENSG00000138030</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2f83a279-1e91-4c20-ab35-0fbd94c31885"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.3"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100938"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KHK3"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2996495"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6298387"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6284103"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000138030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01745c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tag1p_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4351" metaid="_6bfc4346-8d59-4fd8-af6b-41405b4de8a1" name="R_HMR_4351" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:14690456;PMID:14988808;PMID:15234337;PMID:2843500</p> + <p>ec-code: 5.3.1.6</p> + <p>metanetx.reaction: MNXR104084 || MNXR106809</p> + <p>kegg.reaction: R01056</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 5.3.1.6</p> + <p>pmids: 2843500,14690456,14988808,15234337</p> + <p>GENE_ASSOCIATION: ENSG00000153574</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6bfc4346-8d59-4fd8-af6b-41405b4de8a1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.6"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104084"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106809"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01056"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2843500"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/14690456"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15234337"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/14988808"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000153574"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02845r" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02846r" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4473" metaid="c7c1f092-4aea-48a2-8d25-feb3f47ea431" name="R_HMR_4473" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:12398160;PMID:1504088;PMID:15558954;PMID:16756494;PMID:2753047;PMID:3943305;PMID:6212636;PMID:7194116;PMID:7225115;PMID:7623792</p> + <p>ec-code: 1.1.1.44</p> + <p>metanetx.reaction: MNXR100389</p> + <p>kegg.reaction: R01528</p> + <p>bigg.reaction: GNDer</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 1.1.1.44</p> + <p>pmids: 1504088,2753047,3943305,6212636,7194116,7225115,7623792,12398160,15558954,16756494</p> + <p>GENE_ASSOCIATION: ENSG00000142657</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c7c1f092-4aea-48a2-8d25-feb3f47ea431"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.44"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100389"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01528"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GNDer"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/16756494"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6212636"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7623792"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3943305"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7225115"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15558954"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7194116"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12398160"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2753047"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/1504088"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000142657"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01169r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02554r" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02846r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02555r" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01596r" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4352" metaid="be77e7e9-9978-4d8f-9533-2dd900d0bde5" name="R_HMR_4352" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:14690456;PMID:14988808;PMID:15234337;PMID:2843500</p> + <p>ec-code: 5.3.1.6</p> + <p>metanetx.reaction: MNXR104084 || MNXR106809</p> + <p>kegg.reaction: R01056</p> + <p>bigg.reaction: RPI</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 5.3.1.6</p> + <p>pmids: 2843500,14690456,14988808,15234337</p> + <p>GENE_ASSOCIATION: ENSG00000153574</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#be77e7e9-9978-4d8f-9533-2dd900d0bde5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.6"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104084"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106809"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01056"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RPI"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2843500"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/14690456"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15234337"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/14988808"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000153574"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02845c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02846c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4474" metaid="_83d5dfd1-ca06-416b-8f50-068a6b157458" name="R_HMR_4474" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:12398160;PMID:1504088;PMID:15558954;PMID:16756494;PMID:2753047;PMID:3943305;PMID:6212636;PMID:7194116;PMID:7225115;PMID:7623792</p> + <p>ec-code: 1.1.1.44</p> + <p>metanetx.reaction: MNXR100389</p> + <p>kegg.reaction: R01528</p> + <p>bigg.reaction: GND</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 1.1.1.44</p> + <p>pmids: 1504088,2753047,3943305,6212636,7194116,7225115,7623792,12398160,15558954,16756494</p> + <p>GENE_ASSOCIATION: ENSG00000142657</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_83d5dfd1-ca06-416b-8f50-068a6b157458"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.44"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100389"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01528"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GND"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/16756494"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6212636"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7623792"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3943305"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7225115"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15558954"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7194116"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/12398160"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2753047"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/1504088"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000142657"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01169c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02554c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02846c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02555c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01596c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_9800" metaid="_329c99c1-064e-4527-a8da-785581323147" name="R_HMR_9800" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>ec-code: 2.7.1.3</p> + <p>metanetx.reaction: MNXR108451</p> + <p>kegg.reaction: R03819</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.7.1.3</p> + <p>GENE_ASSOCIATION: ENSG00000138030</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_329c99c1-064e-4527-a8da-785581323147"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.3"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR108451"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03819"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000138030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m03165c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m03166c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4398" metaid="c2e9d022-c156-4c88-a796-2bc148714535" name="R_HMR_4398" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:4989681;PMID:9226884</p> + <p>ec-code: 4.1.2.4</p> + <p>metanetx.reaction: MNXR97787</p> + <p>kegg.reaction: R01066</p> + <p>bigg.reaction: DRPA</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 4.1.2.4</p> + <p>pmids: 4989681,9226884</p> + <p>GENE_ASSOCIATION: ENSG00000023697</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c2e9d022-c156-4c88-a796-2bc148714535"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.4"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97787"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01066"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DRPA"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/9226884"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/4989681"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000023697"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m00640c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01939c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01249c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4354" metaid="f7108fb4-b7e5-49a3-ada1-a6024a22b77c" name="R_HMR_4354" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:14953458;PMID:3023765;PMID:5769188;PMID:8050998</p> + <p>ec-code: 5.4.2.2 || 5.4.2.7</p> + <p>metanetx.reaction: MNXR106810 || MNXR103115</p> + <p>kegg.reaction: R01057</p> + <p>bigg.reaction: PPM</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 5.4.2.2;5.4.2.7</p> + <p>pmids: 3023765,5769188,8050998,14953458</p> + <p>GENE_ASSOCIATION: ( ENSG00000079739 ) OR ( ENSG00000169299 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f7108fb4-b7e5-49a3-ada1-a6024a22b77c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.2"/> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.7"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106810"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103115"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01057"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPM"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/14953458"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/3023765"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/5769188"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/8050998"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000169299"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000079739"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m02844c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02845c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4310" metaid="_9239b4c7-a967-4956-b094-a7de9aff2cba" name="R_HMR_4310" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:2996495;PMID:7833921</p> + <p>ec-code: 2.7.1.3</p> + <p>metanetx.reaction: MNXR100936</p> + <p>kegg.reaction: R00866</p> + <p>bigg.reaction: KHK</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 2.7.1.3</p> + <p>pmids: 2996495,7833921</p> + <p>GENE_ASSOCIATION: ENSG00000138030</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9239b4c7-a967-4956-b094-a7de9aff2cba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.3"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100936"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00866"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KHK"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2996495"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/7833921"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000138030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01840c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01842c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4476" metaid="_9560c25f-9d92-4a3c-bfbb-374877a611c3" name="R_HMR_4476" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:10978316</p> + <p>ec-code: 2.3.1.57</p> + <p>metanetx.reaction: MNXR100390</p> + <p>kegg.reaction: R01737</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 2.3.1.57</p> + <p>pmids: 10978316</p> + <p>GENE_ASSOCIATION: ( ENSG00000130066 ) OR ( ENSG00000141504 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9560c25f-9d92-4a3c-bfbb-374877a611c3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.57"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100390"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01737"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/10978316"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000141504"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000130066"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01169c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m02039c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01285c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01371c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01683c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4399" metaid="_961e9144-e77b-430b-8dd8-8001acf778ea" name="R_HMR_4399" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:9893952</p> + <p>ec-code: 4.2.1.47</p> + <p>metanetx.reaction: MNXR100377</p> + <p>kegg.reaction: R00888</p> + <p>bigg.reaction: GMAND</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 4.2.1.47</p> + <p>pmids: 9893952</p> + <p>GENE_ASSOCIATION: ENSG00000112699</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_961e9144-e77b-430b-8dd8-8001acf778ea"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.47"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100377"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00888"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GMAND"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/9893952"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="ENSG00000112699"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01951c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02040c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01949c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_1000_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4477" metaid="_44d922a9-9c8a-409b-b662-408d43f39b21" name="R_HMR_4477" reversible="true" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:15234337;PMID:234468;PMID:2843500</p> + <p>ec-code: 5.1.3.1</p> + <p>metanetx.reaction: MNXR104083</p> + <p>kegg.reaction: R01529</p> + <p>bigg.reaction: RPE</p> + <p>SUBSYSTEM: Pentose phosphate pathway</p> + <p>EC_NUMBER: 5.1.3.1</p> + <p>pmids: 234468,2843500,15234337</p> + <p>GENE_ASSOCIATION: ( ENSG00000197713 ) OR ( ENSG00000235376 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_44d922a9-9c8a-409b-b662-408d43f39b21"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.3.1"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104083"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01529"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RPE"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/234468"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/2843500"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/15234337"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000197713"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000235376"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01761c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m02846c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_1000_0" id="R_HMR_4356" metaid="e6efa094-5aeb-412c-8390-f6707d0794e0" name="R_HMR_4356" reversible="false" sboTerm="SBO:0000176"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>Confidence Level: 0</p> + <p>AUTHORS: PMID:5114731;PMID:5655259;PMID:6054986</p> + <p>ec-code: 4.1.2.13</p> + <p>metanetx.reaction: MNXR99460</p> + <p>kegg.reaction: R02568</p> + <p>bigg.reaction: FBA2</p> + <p>SUBSYSTEM: Fructose and mannose metabolism</p> + <p>EC_NUMBER: 4.1.2.13</p> + <p>pmids: 5114731,5655259,6054986</p> + <p>GENE_ASSOCIATION: ( ENSG00000109107 ) OR ( ENSG00000136872 ) OR ( ENSG00000149925 ) OR ( ENSG00000285043 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e6efa094-5aeb-412c-8390-f6707d0794e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.13"/> + <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99460"/> + <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02568"/> + <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FBA2"/> + </rdf:Bag> + </bqbiol:is> + <bqbiol:isDescribedBy> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/pubmed/5114731"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/6054986"/> + <rdf:li rdf:resource="https://identifiers.org/pubmed/5655259"/> + </rdf:Bag> + </bqbiol:isDescribedBy> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="ENSG00000136872"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000149925"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000109107"/> + <fbc:geneProductRef fbc:geneProduct="ENSG00000285043"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_m01690c" stoichiometry="1"/> + <speciesReference constant="true" species="M_m01981c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_m01842c" stoichiometry="1"/> + </listOfProducts> + </reaction> + </listOfReactions> + </model> +</sbml>