--- a/tools/networkAnalysis/CompoundNet/CompoundNet.xml	Thu Nov 17 07:57:52 2022 +0000
+++ b/tools/networkAnalysis/CompoundNet/CompoundNet.xml	Thu Jan 12 13:45:13 2023 +0000
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="met4j_CompoundNet" name="CompoundNet" version="1.2.0">
+<tool id="met4j_CompoundNet" name="CompoundNet" version="1.2.1">
   <description>Advanced creation of a compound graph representation of a SBML file content</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.2.0</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.2.1</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.CompoundNet -s "$inputPath"
 #if str($inputSide) != 'None':
@@ -27,7 +27,7 @@
 ]]></command>
   <inputs>
     <param argument="-s" format="sbml" label="input SBML file" name="inputPath" optional="false" type="data" value=""/>
-    <param argument="-sc" format="" label="input Side compound file" name="inputSide" optional="true" type="data" value=""/>
+    <param argument="-sc" format="txt" label="input Side compound file" name="inputSide" optional="true" type="data" value=""/>
     <param argument="-mc" label="merge compartments. Use names if consistent and unambiguous across compartments, or identifiers if compartment suffix is present (id in form &quot;xxx_y&quot; with xxx as base identifier and y as compartment label)." name="mergingStrat" optional="true" type="select" value="no">
       <option selected="true" value="no">no</option>
       <option value="by_name">by_name</option>
@@ -42,7 +42,7 @@
     <param argument="-am" checked="false" falsevalue="" label="export as matrix (implies simple graph conversion). Default export as GML file" name="asMatrix" truevalue="-am" type="boolean" value="false"/>
   </inputs>
   <outputs>
-    <data format="" name="outputPath"/>
+    <data format="gml" name="outputPath"/>
   </outputs>
   <tests>
     <test>