diff tools/networkAnalysis/DistanceMatrix/DistanceMatrix.xml @ 5:35c9abcd8934 draft

planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 8577c4cd3ad279c5e97f48f822e041c6b0d90598
author metexplore
date Thu, 12 Jan 2023 13:45:13 +0000
parents ae4c301919c4
children 7a6f2380fc1d
line wrap: on
line diff
--- a/tools/networkAnalysis/DistanceMatrix/DistanceMatrix.xml	Thu Nov 17 07:57:52 2022 +0000
+++ b/tools/networkAnalysis/DistanceMatrix/DistanceMatrix.xml	Thu Jan 12 13:45:13 2023 +0000
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="met4j_DistanceMatrix" name="DistanceMatrix" version="1.2.0">
+<tool id="met4j_DistanceMatrix" name="DistanceMatrix" version="1.2.1">
   <description>Create a compound to compound distance matrix.</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.2.0</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.2.1</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.DistanceMatrix -i "$inputPath"
 #if str($sideCompoundFile) != 'None':
@@ -38,7 +38,8 @@
       <output ftype="csv" name="outputPath">
         <assert_contents>
           <has_n_lines n="9"/>
-          <has_line_matching expression="B,1.0,0.0,Infinity,2.0,1.0,Infinity,2.0,Infinity" n="1"/>
+          <has_line_matching expression="id,A,A_ext,B,C,D,D_ext,E,E_ext" n="1"/>
+          <has_line_matching expression="B,1.0,Infinity,0.0,2.0,1.0,2.0,Infinity,Infinity" n="1"/>
         </assert_contents>
       </output>
     </test>
@@ -50,7 +51,11 @@
       <output ftype="csv" name="outputPath">
         <assert_contents>
           <has_n_lines n="8"/>
-          <has_line_matching expression="B,9.0,0.0,13.0,16.0,32.0,17.0,36.0" n="1"/>
+          <has_line_matching expression="id,A,B,C,D,D_ext,E,E_ext" n="1"/>
+          <has_line_matching expression="A,0.0,4.0,4.0,20.0,21.0,24.0,25.0" n="1"/>
+          <has_line_matching expression="B,4.0,0.0,8.0,16.0,17.0,20.0,21.0" n="1"/>
+          <has_line_matching expression="C,4.0,8.0,0.0,16.0,17.0,20.0,21.0" n="1"/>
+          <has_line_matching expression="D,8.0,4.0,4.0,0.0,1.0,4.0,5.0" n="1"/>
         </assert_contents>
       </output>
     </test>