Mercurial > repos > metexplore > met4j
diff tools/networkAnalysis/DistanceMatrix/DistanceMatrix.xml @ 5:35c9abcd8934 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 8577c4cd3ad279c5e97f48f822e041c6b0d90598
author | metexplore |
---|---|
date | Thu, 12 Jan 2023 13:45:13 +0000 |
parents | ae4c301919c4 |
children | 7a6f2380fc1d |
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--- a/tools/networkAnalysis/DistanceMatrix/DistanceMatrix.xml Thu Nov 17 07:57:52 2022 +0000 +++ b/tools/networkAnalysis/DistanceMatrix/DistanceMatrix.xml Thu Jan 12 13:45:13 2023 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_DistanceMatrix" name="DistanceMatrix" version="1.2.0"> +<tool id="met4j_DistanceMatrix" name="DistanceMatrix" version="1.2.1"> <description>Create a compound to compound distance matrix.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.2.0</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.2.1</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.DistanceMatrix -i "$inputPath" #if str($sideCompoundFile) != 'None': @@ -38,7 +38,8 @@ <output ftype="csv" name="outputPath"> <assert_contents> <has_n_lines n="9"/> - <has_line_matching expression="B,1.0,0.0,Infinity,2.0,1.0,Infinity,2.0,Infinity" n="1"/> + <has_line_matching expression="id,A,A_ext,B,C,D,D_ext,E,E_ext" n="1"/> + <has_line_matching expression="B,1.0,Infinity,0.0,2.0,1.0,2.0,Infinity,Infinity" n="1"/> </assert_contents> </output> </test> @@ -50,7 +51,11 @@ <output ftype="csv" name="outputPath"> <assert_contents> <has_n_lines n="8"/> - <has_line_matching expression="B,9.0,0.0,13.0,16.0,32.0,17.0,36.0" n="1"/> + <has_line_matching expression="id,A,B,C,D,D_ext,E,E_ext" n="1"/> + <has_line_matching expression="A,0.0,4.0,4.0,20.0,21.0,24.0,25.0" n="1"/> + <has_line_matching expression="B,4.0,0.0,8.0,16.0,17.0,20.0,21.0" n="1"/> + <has_line_matching expression="C,4.0,8.0,0.0,16.0,17.0,20.0,21.0" n="1"/> + <has_line_matching expression="D,8.0,4.0,4.0,0.0,1.0,4.0,5.0" n="1"/> </assert_contents> </output> </test>