diff build/tools/ChemSimilarityWeighting/ChemSimilarityWeighting.xml @ 11:40c15b7467f1 draft default tip

planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 61dbdbae896d18b519a470e056cb8b4f98394518
author metexplore
date Thu, 13 Feb 2025 15:08:22 +0000
parents 6a112eaf8f38
children
line wrap: on
line diff
--- a/build/tools/ChemSimilarityWeighting/ChemSimilarityWeighting.xml	Mon Feb 03 15:59:46 2025 +0000
+++ b/build/tools/ChemSimilarityWeighting/ChemSimilarityWeighting.xml	Thu Feb 13 15:08:22 2025 +0000
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<tool id="met4j_ChemSimilarityWeighting" name="ChemSimilarityWeighting" version="2.0.0">
+<tool id="met4j_ChemSimilarityWeighting" name="ChemSimilarityWeighting" version="2.0.1">
   <description>Provides tabulated compound graph edge list, with one column with reactant pair's chemical similarity.</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:2.0.0</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:2.0.1</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.ChemSimilarityWeighting#if str($type):
  -f "$type"
@@ -68,7 +68,7 @@
   <help><![CDATA[Provides tabulated compound graph edge list, with one column with reactant pair's chemical similarity.Chemical similarity has been proposed as edge weight for finding meaningful paths in metabolic networks, using shortest (lightest) path search.]]></help>
   <citations>
     <citation type="doi">10.1093/bioinformatics/btg217</citation>
+    <citation type="doi">10.1093/bioinformatics/btu760</citation>
     <citation type="doi">10.1093/bioinformatics/bti116</citation>
-    <citation type="doi">10.1093/bioinformatics/btu760</citation>
   </citations>
 </tool>