--- a/build/tools/Tab2Sbml/Tab2Sbml.xml	Mon Feb 03 15:59:46 2025 +0000
+++ b/build/tools/Tab2Sbml/Tab2Sbml.xml	Thu Feb 13 15:08:22 2025 +0000
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<tool id="met4j_Tab2Sbml" name="Tab2Sbml" version="2.0.0">
+<tool id="met4j_Tab2Sbml" name="Tab2Sbml" version="2.0.1">
   <description>Create a Sbml File from a tabulated file that contains the reaction ids and the formulas</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:2.0.0</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:2.0.1</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Tab2Sbml#if str($colid) != 'nan':
  -ci "$colid"
@@ -76,63 +76,117 @@
   </outputs>
   <tests>
     <test>
+            
       <param name="in" value="toy_model.tsv"/>
+            
       <output ftype="sbml" name="sbml">
+                
         <assert_contents>
+                    
           <is_valid_xml/>
+                    
           <has_line_matching expression=".*reaction .*" n="7"/>
+                    
           <has_line_matching expression=".*species .*" n="8"/>
+                  
         </assert_contents>
+              
       </output>
+          
     </test>
     <test>
+            
       <param name="in" value="toy_model_otherColumns.tsv"/>
+            
       <param name="colid" value="2"/>
+            
       <param name="colformula" value="3"/>
+            
       <output ftype="sbml" name="sbml">
+                
         <assert_contents>
+                    
           <is_valid_xml/>
+                    
           <has_line_matching expression=".*reaction .*" n="7"/>
+                    
           <has_line_matching expression=".*species .*" n="8"/>
+                  
         </assert_contents>
+              
       </output>
+          
     </test>
     <test>
+            
       <param name="in" value="toy_model_otherSigns.tsv"/>
+            
       <param name="i" value="-&gt;"/>
+            
       <param name="r" value="="/>
+            
       <output ftype="sbml" name="sbml">
+                
         <assert_contents>
+                    
           <is_valid_xml/>
+                    
           <has_line_matching expression=".*reaction .*" n="7"/>
+                    
           <has_line_matching expression=".*species .*" n="8"/>
+                  
         </assert_contents>
+              
       </output>
+          
     </test>
     <test>
+            
       <param name="in" value="toy_model.tsv"/>
+            
       <param name="rp" value="true"/>
+            
       <param name="mp" value="true"/>
+            
       <param name="e" value="_e"/>
+            
       <param name="createCompartment" value="true"/>
+            
       <output ftype="sbml" name="sbml">
+                
         <assert_contents>
+                    
           <is_valid_xml/>
+                    
           <has_line_matching expression=".*boundaryCondition=.true.*" n="3"/>
+                    
           <has_line_matching expression=".*id=.M_A_ext_e.*" n="1"/>
+                    
           <has_line_matching expression=".*id=.R_reac2.*" n="1"/>
+                  
         </assert_contents>
+              
       </output>
+          
     </test>
     <test>
+            
       <param name="in" value="toy_model.tsv"/>
+            
       <param name="id" value="myModel"/>
+            
       <output ftype="sbml" name="sbml">
+                
         <assert_contents>
+                    
           <is_valid_xml/>
+                    
           <has_line_matching expression=".*myModel.*" n="1"/>
+                  
         </assert_contents>
+              
       </output>
+          
     </test>
   </tests>
   <help><![CDATA[Create a Sbml File from a tabulated file that contains the reaction ids and the formulas]]></help>