--- a/tools/attributes/GetGenesFromReactions/GetGenesFromReactions.xml	Mon Feb 03 15:59:46 2025 +0000
+++ b/tools/attributes/GetGenesFromReactions/GetGenesFromReactions.xml	Thu Feb 13 15:08:22 2025 +0000
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<tool id="met4j_GetGenesFromReactions" name="GetGenesFromReactions" version="2.0.0">
+<tool id="met4j_GetGenesFromReactions" name="GetGenesFromReactions" version="2.0.1">
   <description>Get gene lists from a list of reactions and a SBML file.</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:2.0.0</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:2.0.1</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.GetGenesFromReactions -i "$sbml"
  -r "$reactionFile"
@@ -34,15 +34,25 @@
   </outputs>
   <tests>
     <test>
+            
       <param name="sbml" value="XF_network.sbml"/>
+            
       <param name="reactionFile" value="XF_network_R_Seed.tab"/>
+            
       <output ftype="tsv" name="outputFile">
+                
         <assert_contents>
+                    
           <has_n_lines n="2"/>
+                    
           <has_line_matching expression="R_GLUN.*XFCFBP8418_026750" n="1"/>
+                    
           <has_line_matching expression="R_ACGS.*XFCFBP8418_025260" n="1"/>
+                  
         </assert_contents>
+              
       </output>
+          
     </test>
   </tests>
   <help><![CDATA[Get associated gene list from a list of reactions and a SBML file. Parse SBML GPR annotations and output a tab-separated file with one row per gene, associated reaction identifiers from input file in first column, gene identifiers in second column.]]></help>