diff tools/convert/Sbml2Tab/Sbml2Tab.xml @ 11:40c15b7467f1 draft default tip

planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 61dbdbae896d18b519a470e056cb8b4f98394518
author metexplore
date Thu, 13 Feb 2025 15:08:22 +0000
parents 6a112eaf8f38
children
line wrap: on
line diff
--- a/tools/convert/Sbml2Tab/Sbml2Tab.xml	Mon Feb 03 15:59:46 2025 +0000
+++ b/tools/convert/Sbml2Tab/Sbml2Tab.xml	Thu Feb 13 15:08:22 2025 +0000
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<tool id="met4j_Sbml2Tab" name="Sbml2Tab" version="2.0.0">
+<tool id="met4j_Sbml2Tab" name="Sbml2Tab" version="2.0.1">
   <description>Create a tabulated file listing reaction attributes from a SBML file</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:2.0.0</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:2.0.1</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Sbml2Tab#if str($i):
  -irr "$i"
@@ -34,28 +34,50 @@
   </outputs>
   <tests>
     <test>
+            
       <param name="in" value="toy_model.xml"/>
+            
       <output ftype="tsv" name="out">
+                
         <assert_contents>
+                    
           <has_n_lines n="8"/>
+                    
           <has_n_columns n="9"/>
+                    
           <has_text text="2.0 E[c] --&gt; D[c]"/>
+                    
           <has_text text="A[c] &lt;==&gt; B[c]"/>
+                  
         </assert_contents>
+              
       </output>
+          
     </test>
     <test>
+            
       <param name="in" value="toy_model.xml"/>
+            
       <param name="i" value="-&gt;"/>
+            
       <param name="r" value="="/>
+            
       <output ftype="tsv" name="out">
+                
         <assert_contents>
+                    
           <has_n_lines n="8"/>
+                    
           <has_n_columns n="9"/>
+                    
           <has_text text="2.0 E[c] -&gt; D[c]"/>
+                    
           <has_text text="A[c] = B[c]"/>
+                  
         </assert_contents>
+              
       </output>
+          
     </test>
   </tests>
   <help><![CDATA[Create a tabulated file listing reaction attributes from a SBML file]]></help>