--- a/tools/networkAnalysis/SeedsAndTargets/SeedsAndTargets.xml	Mon Feb 03 15:59:46 2025 +0000
+++ b/tools/networkAnalysis/SeedsAndTargets/SeedsAndTargets.xml	Thu Feb 13 15:08:22 2025 +0000
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<tool id="met4j_SeedsAndTargets" name="SeedsAndTargets" version="2.0.0">
+<tool id="met4j_SeedsAndTargets" name="SeedsAndTargets" version="2.0.1">
   <description>Identify exogenously acquired compounds, exogenously available producible compounds and/or dead ends metabolites from metabolic network topology</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:2.0.0</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:2.0.1</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.SeedsAndTargets -i "$inputPath"
 #if str($inputSide) != 'None':
@@ -44,41 +44,75 @@
   </outputs>
   <tests>
     <test>
+            
       <param name="inputPath" value="XF_network.sbml"/>
+            
       <param name="source" value="true"/>
+            
       <output ftype="tsv" name="outputPath">
+                
         <assert_contents>
+                    
           <has_n_columns n="1"/>
+                    
           <has_n_lines n="109"/>
+                    
           <has_line_matching expression="M_\S+_\w" n="109"/>
+                  
         </assert_contents>
+              
       </output>
+          
     </test>
     <test>
+            
       <param name="inputPath" value="XF_network.sbml"/>
+            
       <param name="sink" value="true"/>
+            
       <param name="useInternal" value="true"/>
+            
       <param name="comp" value="e"/>
+            
       <output ftype="tsv" name="outputPath">
+                
         <assert_contents>
+                    
           <has_n_columns n="1"/>
+                    
           <has_n_lines n="5"/>
+                    
           <has_line_matching expression="^M_\S+_\w" n="5"/>
+                  
         </assert_contents>
+              
       </output>
+          
     </test>
     <test>
+            
       <param name="inputPath" value="XF_network.sbml"/>
+            
       <param name="sink" value="true"/>
+            
       <param name="useBorensteinAlg" value="true"/>
+            
       <param name="comp" value="e"/>
+            
       <output ftype="tsv" name="outputPath">
+                
         <assert_contents>
+                    
           <has_n_columns n="1"/>
+                    
           <has_n_lines n="26"/>
+                    
           <has_line_matching expression="^M_\S+_\w" n="26"/>
+                  
         </assert_contents>
+              
       </output>
+          
     </test>
   </tests>
   <help><![CDATA[Identify exogenously acquired compounds, exogenously available producible compounds and/or dead ends metabolites from metabolic network topology