Mercurial > repos > metexplore > met4j
diff tools/networkAnalysis/DistanceMatrix/DistanceMatrix.xml @ 10:6a112eaf8f38 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 71071300dd662ad01bd064abcf6866a192eeea95
| author | metexplore |
|---|---|
| date | Mon, 03 Feb 2025 15:59:46 +0000 |
| parents | 0976a6257300 |
| children | 40c15b7467f1 |
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--- a/tools/networkAnalysis/DistanceMatrix/DistanceMatrix.xml Fri Jan 31 18:28:53 2025 +0000 +++ b/tools/networkAnalysis/DistanceMatrix/DistanceMatrix.xml Mon Feb 03 15:59:46 2025 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8" standalone="no"?> -<tool id="met4j_DistanceMatrix" name="DistanceMatrix" version="develop"> +<tool id="met4j_DistanceMatrix" name="DistanceMatrix" version="2.0.0"> <description>Create a compound to compound distance matrix.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:develop</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:2.0.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.DistanceMatrix -i "$inputPath" #if str($sideCompoundFile) != 'None': @@ -34,294 +34,30 @@ </outputs> <tests> <test> - - - - - - - - - - - <param name="inputPath" value="toy_model.xml"/> - - - - - - - - - - - <output ftype="csv" name="outputPath"> - - - - - - - - - - - <assert_contents> - - - - - - - - - - - <has_n_lines n="9"/> - - - - - - - - - - - <has_line_matching expression="id,A,A_ext,B,C,D,D_ext,E,E_ext" n="1"/> - - - - - - - - - - - <has_line_matching expression="B,1.0,Infinity,0.0,2.0,1.0,2.0,Infinity,Infinity" n="1"/> - - - - - - - - - - - </assert_contents> - - - - - - - - - - - </output> - - - - - - - - - - - </test> <test> - - - - - - - - - - - <param name="inputPath" value="toy_model.xml"/> - - - - - - - - - - - <param name="sideCompoundFile" value="sides.txt"/> - - - - - - - - - - - <param name="degree" value="true"/> - - - - - - - - - - - <param name="undirected" value="true"/> - - - - - - - - - - - <output ftype="csv" name="outputPath"> - - - - - - - - - - - <assert_contents> - - - - - - - - - - - <has_n_lines n="8"/> - - - - - - - - - - - <has_line_matching expression="id,A,B,C,D,D_ext,E,E_ext" n="1"/> - - - - - - - - - - - <has_line_matching expression="A,0.0,4.0,4.0,20.0,21.0,24.0,25.0" n="1"/> - - - - - - - - - - - <has_line_matching expression="B,4.0,0.0,8.0,16.0,17.0,20.0,21.0" n="1"/> - - - - - - - - - - - <has_line_matching expression="C,4.0,8.0,0.0,16.0,17.0,20.0,21.0" n="1"/> - - - - - - - - - - - <has_line_matching expression="D,8.0,4.0,4.0,0.0,1.0,4.0,5.0" n="1"/> - - - - - - - - - - - </assert_contents> - - - - - - - - - - - </output> - - - - - - - - - - - </test> </tests> <help><![CDATA[Create a compound to compound distance matrix.