Mercurial > repos > metexplore > met4j
diff build/tools/FbcToNotes/FbcToNotes.xml @ 6:7a6f2380fc1d draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy
author | metexplore |
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date | Wed, 17 May 2023 13:26:37 +0000 |
parents | |
children | 1436e9cde9c9 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/build/tools/FbcToNotes/FbcToNotes.xml Wed May 17 13:26:37 2023 +0000 @@ -0,0 +1,32 @@ +<?xml version="1.0" encoding="UTF-8"?> +<tool id="met4j_FbcToNotes" name="FbcToNotes" version="1.3.0"> + <description>Convert FBC package annotations to sbml notes</description> + <xrefs> + <xref type="bio.tools">met4j</xref> + </xrefs> + <requirements> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.3.0</container> + </requirements> + <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.FbcToNotes -i "$inputPath" + -o "$outputPath" +]]></command> + <inputs> + <param argument="-i" format="sbml" label="input file" name="inputPath" optional="false" type="data" value=""/> + </inputs> + <outputs> + <data format="sbml" name="outputPath"/> + </outputs> + <tests> + <test> + <param name="inputPath" value="ECOL.xml"/> + <output ftype="sbml" name="outputPath"> + <assert_contents> + <is_valid_xml/> + <has_line_matching expression=".*GENE_ASSOCIATION: b2312.*" n="1"/> + </assert_contents> + </output> + </test> + </tests> + <help><![CDATA[Convert FBC package annotations to sbml notes]]></help> + <citations/> +</tool>