Mercurial > repos > metexplore > met4j
diff build/tools/SbmlCheckBalance/SbmlCheckBalance.xml @ 6:7a6f2380fc1d draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy
author | metexplore |
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date | Wed, 17 May 2023 13:26:37 +0000 |
parents | |
children | 1436e9cde9c9 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/build/tools/SbmlCheckBalance/SbmlCheckBalance.xml Wed May 17 13:26:37 2023 +0000 @@ -0,0 +1,24 @@ +<?xml version="1.0" encoding="UTF-8"?> +<tool id="met4j_SbmlCheckBalance" name="SbmlCheckBalance" version="1.3.0"> + <description>Check balance of all the reactions in a SBML.</description> + <xrefs> + <xref type="bio.tools">met4j</xref> + </xrefs> + <requirements> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.3.0</container> + </requirements> + <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh reconstruction.SbmlCheckBalance -sbml "$sbml" + -out "$out" +]]></command> + <inputs> + <param argument="-sbml" format="sbml" label="Original sbml file" name="sbml" optional="false" type="data" value=""/> + </inputs> + <outputs> + <data format="tsv" name="out"/> + </outputs> + <tests/> + <help><![CDATA[Check balance of all the reactions in a SBML. +A reaction is balanced if all its reactants have a chemical formula with a good syntax and if the quantity of each atom is the same in both sides of the reaction. +For each reaction, indicates if the reaction is balanced, the list of the atoms and the sum of their quantity, and the list of the metabolites that don't have a correct chemical formula.]]></help> + <citations/> +</tool>