Mercurial > repos > metexplore > met4j
diff tools/networkAnalysis/NetworkSummary/NetworkSummary.xml @ 6:7a6f2380fc1d draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy
author | metexplore |
---|---|
date | Wed, 17 May 2023 13:26:37 +0000 |
parents | 35c9abcd8934 |
children |
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--- a/tools/networkAnalysis/NetworkSummary/NetworkSummary.xml Thu Jan 12 13:45:13 2023 +0000 +++ b/tools/networkAnalysis/NetworkSummary/NetworkSummary.xml Wed May 17 13:26:37 2023 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_NetworkSummary" name="NetworkSummary" version="1.2.1"> +<tool id="met4j_NetworkSummary" name="NetworkSummary" version="MET4J_VERSION_TEST"> <description>Create a report summarizing several graph measures characterising the structure of the network.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.2.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:MET4J_VERSION_TEST</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.NetworkSummary -i "$inputPath" #if str($sideCompoundFile) != 'None': @@ -26,10 +26,13 @@ </outputs> <tests> <test> - <param name="inputPath" value="toy_model.xml"/> - <output name="outputPath"> - </output> - </test> + <param name="inputPath" value="toy_model.xml"/> + <output name="outputPath"> + <assert_contents> + <has_n_lines min="1"/> + </assert_contents> + </output> + </test> </tests> <help><![CDATA[Use a metabolic network in SBML file and an optional list of side compounds, and produce a report summarizing several graph measures characterising the structure of the network.This includes (non-exhaustive list): size and order, connectivity, density, degree distribution, shortest paths length, top centrality nodes...]]></help> <citations/>