diff tools/networkAnalysis/SeedsAndTargets/SeedsAndTargets.xml @ 6:7a6f2380fc1d draft

planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy
author metexplore
date Wed, 17 May 2023 13:26:37 +0000
parents 35c9abcd8934
children
line wrap: on
line diff
--- a/tools/networkAnalysis/SeedsAndTargets/SeedsAndTargets.xml	Thu Jan 12 13:45:13 2023 +0000
+++ b/tools/networkAnalysis/SeedsAndTargets/SeedsAndTargets.xml	Wed May 17 13:26:37 2023 +0000
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="met4j_SeedsAndTargets" name="SeedsAndTargets" version="1.2.1">
+<tool id="met4j_SeedsAndTargets" name="SeedsAndTargets" version="MET4J_VERSION_TEST">
   <description>Identify exogenously acquired compounds, producible compounds exogenously available and/or dead ends metabolites from metabolic network topology</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.2.1</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:MET4J_VERSION_TEST</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.SeedsAndTargets -i "$inputPath"
 #if str($inputSide) != 'None':
@@ -45,7 +45,6 @@
   <tests>
     <test>
       <param name="inputPath" value="XF_network.sbml"/>
-      <param name="targetsFilePath" value="SeedsAndTargets-result.tab"/>
       <param name="source" value="true"/>
       <output ftype="tsv" name="outputPath">
         <assert_contents>
@@ -57,7 +56,6 @@
     </test>
     <test>
       <param name="inputPath" value="XF_network.sbml"/>
-      <param name="targetsFilePath" value="SeedsAndTargets-result.tab"/>
       <param name="sink" value="true"/>
       <param name="useInternal" value="true"/>
       <param name="comp" value="e"/>
@@ -71,7 +69,6 @@
     </test>
     <test>
       <param name="inputPath" value="XF_network.sbml"/>
-      <param name="targetsFilePath" value="SeedsAndTargets-result.tab"/>
       <param name="sink" value="true"/>
       <param name="useBorensteinAlg" value="true"/>
       <param name="comp" value="e"/>