Mercurial > repos > metexplore > met4j
diff tools/networkAnalysis/SeedsAndTargets/SeedsAndTargets.xml @ 6:7a6f2380fc1d draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy
author | metexplore |
---|---|
date | Wed, 17 May 2023 13:26:37 +0000 |
parents | 35c9abcd8934 |
children |
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--- a/tools/networkAnalysis/SeedsAndTargets/SeedsAndTargets.xml Thu Jan 12 13:45:13 2023 +0000 +++ b/tools/networkAnalysis/SeedsAndTargets/SeedsAndTargets.xml Wed May 17 13:26:37 2023 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_SeedsAndTargets" name="SeedsAndTargets" version="1.2.1"> +<tool id="met4j_SeedsAndTargets" name="SeedsAndTargets" version="MET4J_VERSION_TEST"> <description>Identify exogenously acquired compounds, producible compounds exogenously available and/or dead ends metabolites from metabolic network topology</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.2.1</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:MET4J_VERSION_TEST</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.SeedsAndTargets -i "$inputPath" #if str($inputSide) != 'None': @@ -45,7 +45,6 @@ <tests> <test> <param name="inputPath" value="XF_network.sbml"/> - <param name="targetsFilePath" value="SeedsAndTargets-result.tab"/> <param name="source" value="true"/> <output ftype="tsv" name="outputPath"> <assert_contents> @@ -57,7 +56,6 @@ </test> <test> <param name="inputPath" value="XF_network.sbml"/> - <param name="targetsFilePath" value="SeedsAndTargets-result.tab"/> <param name="sink" value="true"/> <param name="useInternal" value="true"/> <param name="comp" value="e"/> @@ -71,7 +69,6 @@ </test> <test> <param name="inputPath" value="XF_network.sbml"/> - <param name="targetsFilePath" value="SeedsAndTargets-result.tab"/> <param name="sink" value="true"/> <param name="useBorensteinAlg" value="true"/> <param name="comp" value="e"/>