--- a/tools/attributes/SbmlSetGprsFromFile/SbmlSetGprsFromFile.xml	Fri Jun 10 10:31:34 2022 +0000
+++ b/tools/attributes/SbmlSetGprsFromFile/SbmlSetGprsFromFile.xml	Mon Jun 27 13:41:08 2022 +0000
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="met4j_SbmlSetGprsFromFile" name="SbmlSetGprsFromFile" version="0.11.0">
+<tool id="met4j_SbmlSetGprsFromFile" name="SbmlSetGprsFromFile" version="0.12.0">
   <description>Create a new SBML file from an original sbml file and a tabulated file containing reaction ids and Gene association written in a cobra way</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.11.0</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.12.0</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlSetGprsFromFile#if str($colgpr) != 'nan':
  -cgpr "$colgpr"
@@ -72,11 +72,12 @@
 GPR must be written in a cobra way in the tabulated file as described in Schellenberger et al 2011 Nature Protocols 6(9):1290-307
 (The GPR will be written in the SBML file in two locations:
 - in the reaction notes <p>GENE_ASSOCIATION: ( XC_0401 ) OR ( XC_3282 )</p>
-- as fbc gene product association :       <fbc:geneProductAssociation>
-          <fbc:or>
-            <fbc:geneProductRef fbc:geneProduct="XC_3282"/>
-            <fbc:geneProductRef fbc:geneProduct="XC_0401"/>
-          </fbc:or>
-        </fbc:geneProductAssociation>
+- as fbc gene product association :<fbc:geneProductAssociation>
+ <fbc:or>
+  <fbc:geneProductRef fbc:geneProduct="XC_3282"/>
+  <fbc:geneProductRef fbc:geneProduct="XC_0401"/>
+ </fbc:or>
+</fbc:geneProductAssociation>
 ]]></help>
+  <citations/>
 </tool>