--- a/tools/attributes/SbmlSetPathwaysFromFile/SbmlSetPathwaysFromFile.xml	Fri Jun 10 10:31:34 2022 +0000
+++ b/tools/attributes/SbmlSetPathwaysFromFile/SbmlSetPathwaysFromFile.xml	Mon Jun 27 13:41:08 2022 +0000
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="met4j_SbmlSetPathwaysFromFile" name="SbmlSetPathwaysFromFile" version="0.11.0">
+<tool id="met4j_SbmlSetPathwaysFromFile" name="SbmlSetPathwaysFromFile" version="0.12.0">
   <description>Set pathway to reactions in a network from a tabulated file containing the reaction ids and the pathways</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.11.0</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.12.0</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlSetPathwaysFromFile#if str($colp) != 'nan':
  -cp "$colp"
@@ -87,10 +87,11 @@
 The ids must correspond between the tabulated file and the SBML file.
 If prefix R_ is present in the ids in the SBML file and not in the tabulated file, use the -p option.
 Pathways will be written in the SBML file in two ways:- as reaction note (e.g. <p>SUBSYSTEM: purine_biosynthesis</p>)- as SBML group:
-      <groups:group groups:id="purine_biosynthesis" groups:kind="classification" groups:name="purine_biosynthesis">
-        <groups:listOfMembers>
-          <groups:member groups:idRef="R_GLUPRT"/>
-          <groups:member groups:idRef="R_RNDR1b"/>
+<groups:group groups:id="purine_biosynthesis" groups:kind="classification" groups:name="purine_biosynthesis">
+ <groups:listOfMembers>
+  <groups:member groups:idRef="R_GLUPRT"/>
+  <groups:member groups:idRef="R_RNDR1b"/>
 ...
 ]]></help>
+  <citations/>
 </tool>