Mercurial > repos > metexplore > met4j
diff tools/networkAnalysis/ChokePoint/ChokePoint.xml @ 1:9b162ee6ff8e draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
author | metexplore |
---|---|
date | Mon, 27 Jun 2022 13:41:08 +0000 |
parents | dcd16521b969 |
children | e69a78624877 |
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--- a/tools/networkAnalysis/ChokePoint/ChokePoint.xml Fri Jun 10 10:31:34 2022 +0000 +++ b/tools/networkAnalysis/ChokePoint/ChokePoint.xml Mon Jun 27 13:41:08 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_ChokePoint" name="ChokePoint" version="0.11.0"> +<tool id="met4j_ChokePoint" name="ChokePoint" version="0.12.0"> <description>Compute the Choke points of a metabolic network.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.11.0</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.12.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.ChokePoint -i "$inputPath" #if str($sideCompoundFile) != 'None': @@ -48,4 +48,5 @@ <help><![CDATA[Compute the Choke points of a metabolic network. Load points constitute an indicator of lethality and can help identifying drug target Choke points are reactions that are required to consume or produce one compound. Targeting of choke point can lead to the accumulation or the loss of some metabolites, thus choke points constitute an indicator of lethality and can help identifying drug target See : Syed Asad Rahman, Dietmar Schomburg; Observing local and global properties of metabolic pathways: ‘load points’ and ‘choke points’ in the metabolic networks. Bioinformatics 2006; 22 (14): 1767-1774. doi: 10.1093/bioinformatics/btl181]]></help> + <citations/> </tool>