Mercurial > repos > metexplore > met4j
diff tools/networkAnalysis/MetaboRank/MetaboRank.xml @ 1:9b162ee6ff8e draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
author | metexplore |
---|---|
date | Mon, 27 Jun 2022 13:41:08 +0000 |
parents | dcd16521b969 |
children | e69a78624877 |
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--- a/tools/networkAnalysis/MetaboRank/MetaboRank.xml Fri Jun 10 10:31:34 2022 +0000 +++ b/tools/networkAnalysis/MetaboRank/MetaboRank.xml Mon Jun 27 13:41:08 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_MetaboRank" name="MetaboRank" version="0.11.0"> +<tool id="met4j_MetaboRank" name="MetaboRank" version="0.12.0"> <description>Compute the MetaboRank, a custom personalized PageRank for metabolic network.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.11.0</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.12.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.MetaboRank -i "$sbmlFilePath" -s "$seedsFilePath" @@ -50,4 +50,5 @@ The MetaboRank can, from metabolomics results, be used to fuel a recommender system highlighting interesting compounds to investigate, retrieve missing identification and drive literature mining. It is a two dimensional centrality computed from personalized PageRank and CheiRank, with special transition probability and normalization to handle the specificities of metabolic networks. See publication for more information: Frainay et al. MetaboRank: network-based recommendation system to interpret and enrich metabolomics results, Bioinformatics (35-2), https://doi.org/10.1093/bioinformatics/bty577]]></help> + <citations/> </tool>