Mercurial > repos > metexplore > met4j
diff tools/attributes/SbmlToMetaboliteTable/SbmlToMetaboliteTable.xml @ 0:dcd16521b969 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 5dab0a2d83a1fdd7a1878a50ba0f24e752505393
author | metexplore |
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date | Fri, 10 Jun 2022 10:31:34 +0000 |
parents | |
children | 9b162ee6ff8e |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/attributes/SbmlToMetaboliteTable/SbmlToMetaboliteTable.xml Fri Jun 10 10:31:34 2022 +0000 @@ -0,0 +1,33 @@ +<?xml version="1.0" encoding="UTF-8"?> +<tool id="met4j_SbmlToMetaboliteTable" name="SbmlToMetaboliteTable" version="0.11.0"> + <description>Create a tabulated file with metabolite attributes from a SBML file</description> + <xrefs> + <xref type="bio.tools">met4j</xref> + </xrefs> + <requirements> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.11.0</container> + </requirements> + <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlToMetaboliteTable -s "$sbml" + -o "$outputFile" +]]></command> + <inputs> + <param argument="-s" format="sbml" label="Sbml file" name="sbml" optional="false" type="data" value=""/> + </inputs> + <outputs> + <data format="tsv" name="outputFile"/> + </outputs> + <tests> + <test> + <param name="sbml" value="toy_model.xml"/> + <output ftype="tsv" name="outputFile"> + <assert_contents> + <has_n_lines n="9"/> + <has_n_columns n="6"/> + <has_line_matching expression=".*1S/C2H6O/c1-2-3/h3H,2H2,1H3.*" n="1"/> + <has_line_matching expression=".*C.*NC.*" n="1"/> + </assert_contents> + </output> + </test> + </tests> + <help><![CDATA[Create a tabulated file with metabolite attributes from a SBML file]]></help> +</tool>